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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

LXL04_011626
Reference: OH-1004 Chr: Chr02 Coordinates: 168472912-168475464 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1215 bp · LXL04_011626|LXL04_011626|OH1004|cDNA

ATGGGAAACAAGAGTTCAAGAGAATCTTCATCAAGAATAAGAACAGACTCCAATCATCGATGGTCAACGAGTGCTACTTCCACACCAAGGCATCATCATGCCCCAGCTCCTTACGGATACGGGCCACCACTGGGTCATGAAAGAAGGTTGGATAGAAAGTATTCAAGAATAGCCGATGACTACGAGACACTTGAACAGGTTACTTCGGCACTTGCTCAAGCTGGGCTCGAGTCATCGAATTTAATTGTTGGCATCGATTT...

CDS

Download CDS FASTA

1215 bp · LXL04_011626|LXL04_011626|OH1004|CDS

ATGGGAAACAAGAGTTCAAGAGAATCTTCATCAAGAATAAGAACAGACTCCAATCATCGATGGTCAACGAGTGCTACTTCCACACCAAGGCATCATCATGCCCCAGCTCCTTACGGATACGGGCCACCACTGGGTCATGAAAGAAGGTTGGATAGAAAGTATTCAAGAATAGCCGATGACTACGAGACACTTGAACAGGTTACTTCGGCACTTGCTCAAGCTGGGCTCGAGTCATCGAATTTAATTGTTGGCATCGATTT...

Protein

Download Protein FASTA

404 aa · LXL04_011626|LXL04_011626|OH1004|PROTEIN

MGNKSSRESSSRIRTDSNHRWSTSATSTPRHHHAPAPYGYGPPLGHERRLDRKYSRIADDYETLEQVTSALAQAGLESSNLIVGIDFTKSNEWTGARSFNRRSLHNIGMVQNPYEQAISIIGKTLSAFDEDNMIPCFGFGDASTHDQSVFSFYPNSSSCEGFEDVLFRYRDIAPQLRLSGPTSFAPIIEMAVTIVEESGGQYHVLLIIADGQVTRSGDADFGHRELSSQERNTIDAIVKASIYPLSIILVGVGDGPWDMM...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDLXL04_011626
TK1151 IDTkA03G606690
OH-1004 IDLXL04_011626
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)99.500
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionOH-1004 / GCA_047496595.1_OSU_TarKok_2.0
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDLXL04_011626
LocationChr02:168472912-168475464 (+)
DescriptionSimilar to RGLG2: E3 ubiquitin-protein ligase RGLG2
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g14420 E3 ubiquitin-protein ligase that mediates the formation of 'Lys-63'-linked ubiquitin chains.
Ubiquitin lysine 63 chain forming ligases regulate apical dominance in Arabidopsis.2007 · DOI: 10.1105/tpc.107.052035
Arabidopsis RGLG2, functioning as a RING E3 ligase, interacts with AtERF53 and negatively regulates the plant drought stress response.2012 · DOI: 10.1104/pp.111.189738
At3g01650 E3 ubiquitin-protein ligase that mediates the formation of 'Lys-63'-linked ubiquitin chains.
Ubiquitin lysine 63 chain forming ligases regulate apical dominance in Arabidopsis.2007 · DOI: 10.1105/tpc.107.052035
Arabidopsis RGLG2, functioning as a RING E3 ligase, interacts with AtERF53 and negatively regulates the plant drought stress response.2012 · DOI: 10.1104/pp.111.189738
At1g67800 Together with RGLG1, mediates the ubiquitination and subsequent proteasomal degradation of the target protein PP2CA. No verified direct reference in this release
At5g63970 Possesses E3 ubiquitin-protein ligase in vitro.
Two novel RING-type ubiquitin ligases, RGLG3 and RGLG4, are essential for jasmonate-mediated responses in Arabidopsis.2012 · DOI: 10.1104/pp.112.203422
Hijacking of the jasmonate pathway by the mycotoxin fumonisin B1 (FB1) to initiate programmed cell death in Arabidopsis is modulated by RGLG3 and RGLG4.2015 · DOI: 10.1093/jxb/erv068
The Arabidopsis Iron-Sulfur Protein GRXS17 is a Target of the Ubiquitin E3 Ligases RGLG3 and RGLG4.2016 · DOI: 10.1093/pcp/pcw122
At1g79380 Possesses E3 ubiquitin-protein ligase in vitro.
Two novel RING-type ubiquitin ligases, RGLG3 and RGLG4, are essential for jasmonate-mediated responses in Arabidopsis.2012 · DOI: 10.1104/pp.112.203422
Hijacking of the jasmonate pathway by the mycotoxin fumonisin B1 (FB1) to initiate programmed cell death in Arabidopsis is modulated by RGLG3 and RGLG4.2015 · DOI: 10.1093/jxb/erv068
The Arabidopsis Iron-Sulfur Protein GRXS17 is a Target of the Ubiquitin E3 Ligases RGLG3 and RGLG4.2016 · DOI: 10.1093/pcp/pcw122

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_011626 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)
GO:0009611 response to wounding Biological Process
GO:0009690 cytokinin metabolic process Biological Process
GO:0009738 abscisic acid-activated signaling pathway Biological Process
GO:0009789 positive regulation of abscisic acid-activated signaling pathway Biological Process
GO:0009850 auxin metabolic process Biological Process
GO:0009867 jasmonic acid mediated signaling pathway Biological Process
GO:0016567 protein ubiquitination Biological Process
GO:0042742 defense response to bacterium Biological Process
GO:0070534 protein K63-linked ubiquitination Biological Process
GO:0080148 negative regulation of response to water deprivation Biological Process
GO:0005576 extracellular region Cellular Component
GO:0005634 nucleus Cellular Component
KEGG gene cross-reference
ath:AT1G67800
ath:AT1G79380
ath:AT3G01650
ath:AT5G14420
ath:AT5G63970
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.491
Rank 1 · LXL04_011626 · OH-1004
Nucleus0.401
Rank 2 · LXL04_011626 · OH-1004
Cell membrane0.212
Rank 3 · LXL04_011626 · OH-1004
Lysosome / Vacuole0.101
Rank 4 · LXL04_011626 · OH-1004
Golgi apparatus0.057
Rank 5 · LXL04_011626 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF07002.23Copine103-319 aa
PF13920.13zf-C3HC4_3357-397 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
LXL04_011626PF07002.23Copine1033195.3e-72242.5
LXL04_011626PF13920.13zf-C3HC4_33573977.6e-0626.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9LY87Arabidopsis thalianaE3 ubiquitin-protein ligase RGLG265.196%Swiss-Protstrong database homology
Q9SS90Arabidopsis thalianaE3 ubiquitin-protein ligase RGLG164.339%Swiss-Protstrong database homology
Q8LB88Arabidopsis thalianaE3 ubiquitin-protein ligase RGLG565.012%Swiss-Protstrong database homology
Q8RX26Arabidopsis thalianaE3 ubiquitin-protein ligase RGLG359.452%Swiss-Protstrong database homology
Q9SAL0Arabidopsis thalianaE3 ubiquitin-protein ligase RGLG452.228%Swiss-Protstrong database homology

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