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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

LXL04_010266
Reference: OH-1004 Chr: Chr02 Coordinates: 143483232-143486978 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1476 bp · LXL04_010266|LXL04_010266|OH1004|cDNA

ATGGTGATGAGAAGCAAAGCAATCATCAAATGGCCGAAGCAAGTAACAACATCTCTAGTCGAGCAACTGATTAAATCCGAACGAAACGTAGAAAAAGCTCTCACCGTCTTCGATTCCGCATCGGCAGAGTACGCCAATGGCTTCCGCCATGACCACACCACCTACTCCCTCATCATCTCAAAGCTCTTATCCGTAAACCAATTCAAAAGAGCAGAAGACTTCATCGACAGAATGAAAACAGAAAACTGCAAAATCACCGA...

CDS

Download CDS FASTA

1476 bp · LXL04_010266|LXL04_010266|OH1004|CDS

ATGGTGATGAGAAGCAAAGCAATCATCAAATGGCCGAAGCAAGTAACAACATCTCTAGTCGAGCAACTGATTAAATCCGAACGAAACGTAGAAAAAGCTCTCACCGTCTTCGATTCCGCATCGGCAGAGTACGCCAATGGCTTCCGCCATGACCACACCACCTACTCCCTCATCATCTCAAAGCTCTTATCCGTAAACCAATTCAAAAGAGCAGAAGACTTCATCGACAGAATGAAAACAGAAAACTGCAAAATCACCGA...

Protein

Download Protein FASTA

491 aa · LXL04_010266|LXL04_010266|OH1004|PROTEIN

MVMRSKAIIKWPKQVTTSLVEQLIKSERNVEKALTVFDSASAEYANGFRHDHTTYSLIISKLLSVNQFKRAEDFIDRMKTENCKITEDILLSICRAYGRVHKPHDVMRIFQKISDPTIKAYVTVFSILVDENQLKVAFKFYRYMRQLGFPPSVPSLNVLIKALSKNESTMDSAIKILREMPKHGCTPDTYTYGTLINGLCKLSKIKEAKDLFKEMETKGCSPSVVTYTSLIHGLSQSNNLNESMSLFKEMESKNITPNVY...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDLXL04_010266
TK1151 IDTkA03G516290
OH-1004 IDLXL04_010266
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)100.000
Protein coverage (%)TK1151 91.121 / OH-1004 87.780
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionOH-1004 / GCA_047496595.1_OSU_TarKok_2.0
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDLXL04_010266
LocationChr02:143483232-143486978 (+)
DescriptionSimilar to At5g46100: Pentatricopeptide repeat-containing protein At5g46100
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g46100 Pentatricopeptide repeat-containing protein At5g46100. No verified direct reference in this release
At4g20090 May play a role in embryogenesis. No verified direct reference in this release
At3g48810 Pentatricopeptide repeat-containing protein At3g48810. No verified direct reference in this release
At5g64320 Pentatricopeptide repeat-containing protein At5g64320, mitochondrial. No verified direct reference in this release
At1g63130 Pentatricopeptide repeat-containing protein At1g63130, mitochondrial. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_010266 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)
GO:0000963 mitochondrial RNA processing Biological Process
GO:0008380 RNA splicing Biological Process
GO:0009793 embryo development ending in seed dormancy Biological Process
GO:0005739 mitochondrion Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0003723 RNA binding Molecular Function
GO:0003729 mRNA binding Molecular Function
KEGG gene cross-reference
ath:AT3G48810
ath:AT4G20090
ath:AT5G46100
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.863
Rank 1 · LXL04_010266 · OH-1004
Plastid0.059
Rank 2 · LXL04_010266 · OH-1004
Nucleus0.058
Rank 3 · LXL04_010266 · OH-1004
Cytoplasm0.042
Rank 4 · LXL04_010266 · OH-1004
Cell membrane0.012
Rank 5 · LXL04_010266 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF29070.1MSC6_N12-120 aa
PF13041.13PPR_2116-165 aa
PF23276.3TPR_24129-215 aa
PF29070.1MSC6_N132-214 aa
PF13041.13PPR_2151-201 aa
PF13812.13PPR_3175-231 aa
PF12854.14PPR_1184-216 aa
PF01535.27PPR190-220 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
LXL04_010266PF29070.1MSC6_N121202.6e-2383.5
LXL04_010266PF13041.13PPR_21161652.8e-81268.2
LXL04_010266PF23276.3TPR_241292153.6e-2692.4
LXL04_010266PF29070.1MSC6_N1322142.6e-2383.5
LXL04_010266PF13041.13PPR_21512012.8e-81268.2
LXL04_010266PF13812.13PPR_31752314.4e-42142.7
LXL04_010266PF12854.14PPR_11842161.7e-61204.3
LXL04_010266PF01535.27PPR1902206.1e-54177.3
LXL04_010266PF13041.13PPR_21942352.8e-81268.2
LXL04_010266PF17177.11PPR_long2053004.3e-2589.1
LXL04_010266PF29070.1MSC6_N2062822.6e-2383.5
LXL04_010266PF13812.13PPR_32112684.4e-42142.7
LXL04_010266PF12854.14PPR_12182511.7e-61204.3
LXL04_010266PF13041.13PPR_22222712.8e-81268.2
LXL04_010266PF01535.27PPR2252556.1e-54177.3
LXL04_010266PF13812.13PPR_32453014.4e-42142.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9FNL2Arabidopsis thalianaPentatricopeptide repeat-containing protein At5g4610053.992%Swiss-Protstrong database homology
O49436Arabidopsis thalianaPentatricopeptide repeat-containing protein At4g2009030.465%Swiss-Protmoderate database homology
Q9M302Arabidopsis thalianaPentatricopeptide repeat-containing protein At3g4881027.451%Swiss-Protweak database homology
Q9FMF6Arabidopsis thalianaPentatricopeptide repeat-containing protein At5g64320, mitochondrial26.326%Swiss-Protweak database homology
Q9CAN0Arabidopsis thalianaPentatricopeptide repeat-containing protein At1g63130, mitochondrial30.748%Swiss-Protmoderate database homology

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