LXL04_010147 | RubberDandelionOmics

Gene overview

LXL04_010147

Reference: OH-1004 Chr: Chr02 Coordinates: 141049750-141053274 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1857 bp · LXL04_010147|LXL04_010147|OH1004|cDNA

ATGCAAAGAAAGTTCATGGAGAAAAGGGGATTAGATCCCAGTAGTAGTGAAGAAGGTCAACCCGAGAAGAAGAGACCTGCTCTTGCTAGTGTTATAGTTGAAGCGTTAAAAGTGGATAGTTTGCAGAAACTTTGTTCATCATTGGAGCCTATTCTTCGAAGAGTTGTTAGTGAAGAAGTTGAGCGTGCCTTAGCAAAGTTGGGCCCATCAAAAATTAATGGAAGGGCATCCCCAAAGAGAATAGAAGGGCCAGATGGAAG...

CDS

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1857 bp · LXL04_010147|LXL04_010147|OH1004|CDS

ATGCAAAGAAAGTTCATGGAGAAAAGGGGATTAGATCCCAGTAGTAGTGAAGAAGGTCAACCCGAGAAGAAGAGACCTGCTCTTGCTAGTGTTATAGTTGAAGCGTTAAAAGTGGATAGTTTGCAGAAACTTTGTTCATCATTGGAGCCTATTCTTCGAAGAGTTGTTAGTGAAGAAGTTGAGCGTGCCTTAGCAAAGTTGGGCCCATCAAAAATTAATGGAAGGGCATCCCCAAAGAGAATAGAAGGGCCAGATGGAAG...

Protein

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618 aa · LXL04_010147|LXL04_010147|OH1004|PROTEIN

MQRKFMEKRGLDPSSSEEGQPEKKRPALASVIVEALKVDSLQKLCSSLEPILRRVVSEEVERALAKLGPSKINGRASPKRIEGPDGRDLQLHFRSKLSLPLFTGGKVEGERGAAIHVVLIDANTGHVVTCGPESSVKLDIVVLEGDFNNEDEEGWTQEEFETHMVKEREGKRPLLSGEIQVVLKEGVGTLGELTFTDNSSWIRSRKFRLGLKVSSGYCEGIRVREAKTNAFTVKDHRGELYKKHYPPALNDEVWRLEKIG...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_010147`
TK1151 ID	TkA03G502760
OH-1004 ID	LXL04_010147
Relationship / confidence	Sequence Supported Annotation Or Model Conflict / Review
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 17.799 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_010147

Location Chr02:141049750-141053274 (-)

Description Similar to CBP60B: Calmodulin-binding protein 60 B

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g57580`	Transcription activator that binds DNA in a sequence-specific manner, likely 5'-GAAATTTTGG-3', to promote the expression of target genes.	No verified direct reference in this release
`At4g25800`	Transcription activator that binds DNA in a sequence-specific manner, likely 5'-GAAATTTTGG-3', to promote the expression of target genes.	No verified direct reference in this release
`At2g18750`	Transcription activator that binds DNA in a sequence-specific manner, likely 5'-GAAATTTTGG-3', to promote the expression of target genes.	No verified direct reference in this release
`At2g24300`	Transcription activator that binds DNA in a sequence-specific manner, likely 5'-GAAATTTTGG-3', to promote the expression of target genes.	No verified direct reference in this release
`At4g31000`	Transcription activator that binds DNA in a sequence-specific manner, likely 5'-GAAATTTTGG-3', to promote the expression of target genes.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_010147 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006351 DNA-templated transcription Biological Process

GO:0080142 regulation of salicylic acid biosynthetic process Biological Process

GO:0005634 nucleus Cellular Component

GO:0003700 DNA-binding transcription factor activity Molecular Function

GO:0005516 calmodulin binding Molecular Function

GO:0043565 sequence-specific DNA binding Molecular Function

KEGG gene cross-reference

ath:AT2G18750

ath:AT2G24300

ath:AT4G25800

ath:AT4G31000

ath:AT5G57580

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.959

Rank 1 · LXL04_010147 · OH-1004

Cytoplasm0.099

Rank 2 · LXL04_010147 · OH-1004

Cell membrane0.037

Rank 3 · LXL04_010147 · OH-1004

Endoplasmic reticulum0.024

Rank 4 · LXL04_010147 · OH-1004

Plastid0.014

Rank 5 · LXL04_010147 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF07887.17Calmodulin_bind89-236 aa

PF20451.4Calmod_bind_M248-314 aa

PF20452.4Calmod_bind_C319-381 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_010147	`PF07887.17`	Calmodulin_bind	89	236	3.8e-62	209.5
LXL04_010147	`PF20451.4`	Calmod_bind_M	248	314	8e-33	113.6
LXL04_010147	`PF20452.4`	Calmod_bind_C	319	381	1.6e-20	73.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9FKL6`	Arabidopsis thaliana	Calmodulin-binding protein 60 B	59.259%	Swiss-Prot	strong database homology
`Q0WVV6`	Arabidopsis thaliana	Calmodulin-binding protein 60 D	60.289%	Swiss-Prot	strong database homology
`C0SV51`	Arabidopsis thaliana	Calmodulin-binding protein 60 C	56.146%	Swiss-Prot	strong database homology
`F4IPM3`	Arabidopsis thaliana	Calmodulin-binding protein 60 E	54.414%	Swiss-Prot	strong database homology
`F4JR57`	Arabidopsis thaliana	Calmodulin-binding protein 60 F	52.824%	Swiss-Prot	strong database homology

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