LXL04_009395 | RubberDandelionOmics

Gene overview

LXL04_009395

Reference: OH-1004 Chr: Chr02 Coordinates: 125326700-125332290 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

4038 bp · LXL04_009395|LXL04_009395|OH1004|cDNA

ATGGACATTTCCTTGTCGCGTTATCAGAACACATCAGTCTTCGAAAATAGCTCTTGCTCGTTAACGGATTTAAAATTAGCTCATGAAAGACACTGGCTTTCTGCGTCGTCCCCTTTTAAAAGAGTACGAAAACCCCATGTGTCTGCGATTAATTACCGATTTGTAGAACAGGGATTACATCCAAAACCCAAGCCGAAGCCACTTAATACTGGTCATGATGTAGTAAAGAAAGAAACTGATGTCCACGACTCGCGTCAGAT...

CDS

Download CDS FASTA

4038 bp · LXL04_009395|LXL04_009395|OH1004|CDS

ATGGACATTTCCTTGTCGCGTTATCAGAACACATCAGTCTTCGAAAATAGCTCTTGCTCGTTAACGGATTTAAAATTAGCTCATGAAAGACACTGGCTTTCTGCGTCGTCCCCTTTTAAAAGAGTACGAAAACCCCATGTGTCTGCGATTAATTACCGATTTGTAGAACAGGGATTACATCCAAAACCCAAGCCGAAGCCACTTAATACTGGTCATGATGTAGTAAAGAAAGAAACTGATGTCCACGACTCGCGTCAGAT...

Protein

Download Protein FASTA

1345 aa · LXL04_009395|LXL04_009395|OH1004|PROTEIN

MDISLSRYQNTSVFENSSCSLTDLKLAHERHWLSASSPFKRVRKPHVSAINYRFVEQGLHPKPKPKPLNTGHDVVKKETDVHDSRQINGSSSGLCGQIEKLVLCKRYRDALEMFEILEIECEYDVHVGKSTYDALVVACISLKSIRGVKRVFNYMINTGFEPDLYLKNRILLMHVKCGMMIDARTLFDEMPEKNLVSWNTIIAGLVDSRDYLEAFRLFLTMWEEQSDATSRTFATMMRASAGLEIISPGQQLHACSLKMG...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_009395`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_009395

Location Chr02:125326700-125332290 (+)

Description Similar to PAP27: Probable inactive purple acid phosphatase 27

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g50400`	Probable inactive purple acid phosphatase 27.	No verified direct reference in this release
`At4g24890`	Probable inactive purple acid phosphatase 24.	No verified direct reference in this release
`At1g13750`	Probable inactive purple acid phosphatase 1.	No verified direct reference in this release
`At5g50390`	Pentatricopeptide repeat-containing protein At5g50390, chloroplastic.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_009395 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0009451 RNA modification Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0009505 plant-type cell wall Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0003723 RNA binding Molecular Function

GO:0003993 acid phosphatase activity Molecular Function

GO:0008270 zinc ion binding Molecular Function

GO:0016787 hydrolase activity Molecular Function

GO:0046872 metal ion binding Molecular Function

KEGG gene cross-reference

ath:AT1G13750

ath:AT4G24890

ath:AT5G50390

ath:AT5G50400

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.740

Rank 1 · LXL04_009395 · OH-1004

Lysosome / Vacuole0.075

Rank 2 · LXL04_009395 · OH-1004

Cell membrane0.053

Rank 3 · LXL04_009395 · OH-1004

Endoplasmic reticulum0.046

Rank 4 · LXL04_009395 · OH-1004

Cytoplasm0.043

Rank 5 · LXL04_009395 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13041.13PPR_2194-239 aa

PF13041.13PPR_2295-341 aa

PF01535.27PPR299-327 aa

PF13041.13PPR_2395-442 aa

PF13812.13PPR_3396-442 aa

PF01535.27PPR398-426 aa

PF17177.11PPR_long415-562 aa

PF20431.5E_motif513-575 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_009395	`PF13041.13`	PPR_2	194	239	6.2e-51	171.0
LXL04_009395	`PF13041.13`	PPR_2	295	341	6.2e-51	171.0
LXL04_009395	`PF01535.27`	PPR	299	327	1e-46	154.7
LXL04_009395	`PF13041.13`	PPR_2	395	442	6.2e-51	171.0
LXL04_009395	`PF13812.13`	PPR_3	396	442	1.7e-21	76.7
LXL04_009395	`PF01535.27`	PPR	398	426	1e-46	154.7
LXL04_009395	`PF17177.11`	PPR_long	415	562	4.2e-10	40.1
LXL04_009395	`PF20431.5`	E_motif	513	575	2.3e-11	44.5
LXL04_009395	`PF14432.13`	DYW_deaminase	611	695	4.6e-25	88.0
LXL04_009395	`PF17808.8`	fn3_PAP	779	898	1.8e-43	148.1
LXL04_009395	`PF16656.12`	Pur_ac_phosph_N	906	1009	7.9e-13	49.5
LXL04_009395	`PF00149.34`	Metallophos	1021	1236	7.2e-12	46.9
LXL04_009395	`PF14008.12`	Metallophos_C	1261	1320	9.7e-15	55.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q5MAU8`	Arabidopsis thaliana	Probable inactive purple acid phosphatase 27	68.297%	Swiss-Prot	weak database homology
`Q8H1R2`	Arabidopsis thaliana	Probable inactive purple acid phosphatase 24	65.928%	Swiss-Prot	weak database homology
`Q9LMX4`	Arabidopsis thaliana	Probable inactive purple acid phosphatase 1	64.055%	Swiss-Prot	weak database homology
`Q9FK33`	Arabidopsis thaliana	Pentatricopeptide repeat-containing protein At5g50390, chloroplastic	57.857%	Swiss-Prot	moderate database homology

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