LXL04_009113 | RubberDandelionOmics

Gene overview

LXL04_009113

Reference: OH-1004 Chr: Chr02 Coordinates: 118045685-118047502 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1677 bp · LXL04_009113|LXL04_009113|OH1004|cDNA

ATGGATAGAGAATCTTCCGACGACGAAGAAGATCGCCGCCATTTAATTCATCAAAACGACACAATCCCTAAATCCCCACGCCCTTCCACATTTCAGATCGATGAAGACGATCACCGCCAGTTCAAGAGCCCCCGTCATGCCTCCCAAGCTAACAATGTTCGCAATTTAATCTTCAATAAAAGGTACCTCTTCGCTATCGCTCTCCCCCTCCTCATCATCTTCATTTATTTCACTGCCGATTTCAAATCCCTATTCCGGAC...

CDS

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1677 bp · LXL04_009113|LXL04_009113|OH1004|CDS

ATGGATAGAGAATCTTCCGACGACGAAGAAGATCGCCGCCATTTAATTCATCAAAACGACACAATCCCTAAATCCCCACGCCCTTCCACATTTCAGATCGATGAAGACGATCACCGCCAGTTCAAGAGCCCCCGTCATGCCTCCCAAGCTAACAATGTTCGCAATTTAATCTTCAATAAAAGGTACCTCTTCGCTATCGCTCTCCCCCTCCTCATCATCTTCATTTATTTCACTGCCGATTTCAAATCCCTATTCCGGAC...

Protein

Download Protein FASTA

558 aa · LXL04_009113|LXL04_009113|OH1004|PROTEIN

MDRESSDDEEDRRHLIHQNDTIPKSPRPSTFQIDEDDHRQFKSPRHASQANNVRNLIFNKRYLFAIALPLLIIFIYFTADFKSLFRTHLSSGSIQNDAVASNMMRESELRALQLLKQQESGLIDLWNRTSMPNLNSTSTPPNSIHDLRSALIDQISLNKKIQQALLSSHQFGNSFDFNEQNVTDPTMAACRKVDQKLSQRRTIEWKPKHDKYLFAICTSGQMSNHLICLEKHMFFAAILNRVLVIPSSKIDYEFSRVLDI...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_009113`
TK1151 ID	TkA03G398840
OH-1004 ID	LXL04_009113
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	99.800
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_009113

Location Chr02:118045685-118047502 (+)

Description Similar to OFUT5: O-fucosyltransferase 5

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g17270`	O-fucosyltransferase 5.	No verified direct reference in this release
`At5g50420`	O-fucosyltransferase 36.	No verified direct reference in this release
`At1g53770`	O-fucosyltransferase 14.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_009113 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006004 fucose metabolic process Biological Process

GO:0000325 plant-type vacuole Cellular Component

GO:0005634 nucleus Cellular Component

GO:0016020 membrane Cellular Component

GO:0046922 peptide-O-fucosyltransferase activity Molecular Function

KEGG gene cross-reference

ath:AT1G17270

ath:AT1G53770

ath:AT5G50420

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Golgi apparatus0.804

Rank 1 · LXL04_009113 · OH-1004

Endoplasmic reticulum0.102

Rank 2 · LXL04_009113 · OH-1004

Cytoplasm0.078

Rank 3 · LXL04_009113 · OH-1004

Cell membrane0.055

Rank 4 · LXL04_009113 · OH-1004

Extracellular0.040

Rank 5 · LXL04_009113 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF28573.1OFUT_helical_N101-167 aa

PF10250.16O-FucT232-533 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_009113	`PF28573.1`	OFUT_helical_N	101	167	2.4e-25	89.4
LXL04_009113	`PF10250.16`	O-FucT	232	533	2e-09	38.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q84WU0`	Arabidopsis thaliana	O-fucosyltransferase 5	58.752%	Swiss-Prot	strong database homology
`Q9FK30`	Arabidopsis thaliana	O-fucosyltransferase 36	59.138%	Swiss-Prot	strong database homology
`Q501D6`	Arabidopsis thaliana	O-fucosyltransferase 14	57.932%	Swiss-Prot	strong database homology

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