LXL04_009050 | RubberDandelionOmics

Gene overview

LXL04_009050

Reference: OH-1004 Chr: Chr02 Coordinates: 116958389-116959107 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

435 bp · LXL04_009050|LXL04_009050|OH1004|cDNA

ATGGCTTCCCTTCTTTCAACTTCAGCCGCTCCTTCATCCACCTTTCTTCTTCCCACAACTCCCAGAATTCAATCCACCCAACTCTCCAGCGTCTCCATGATCTCTGGTGGACAAAGATTTGTAATCTTGAAGGCGGAGAAAAGATCATCACCACTTTCTCACTGCTTCAAAACCACGATTTCATGCTCCATTGCTCAACCAGAGACACTGAAAATAGTGCAAGCCACCATTGCTAATCAGTTGTCGATTGATGAGAGCAC...

CDS

Download CDS FASTA

435 bp · LXL04_009050|LXL04_009050|OH1004|CDS

ATGGCTTCCCTTCTTTCAACTTCAGCCGCTCCTTCATCCACCTTTCTTCTTCCCACAACTCCCAGAATTCAATCCACCCAACTCTCCAGCGTCTCCATGATCTCTGGTGGACAAAGATTTGTAATCTTGAAGGCGGAGAAAAGATCATCACCACTTTCTCACTGCTTCAAAACCACGATTTCATGCTCCATTGCTCAACCAGAGACACTGAAAATAGTGCAAGCCACCATTGCTAATCAGTTGTCGATTGATGAGAGCAC...

Protein

Download Protein FASTA

144 aa · LXL04_009050|LXL04_009050|OH1004|PROTEIN

MASLLSTSAAPSSTFLLPTTPRIQSTQLSSVSMISGGQRFVILKAEKRSSPLSHCFKTTISCSIAQPETLKIVQATIANQLSIDESTVAPATKFADLGADSLDTVEIMMALEEKFGVSIGESGAENISTVQDAADLIEKVKTDA

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_009050`
TK1151 ID	TkA03G395140
OH-1004 ID	LXL04_009050
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_009050

Location Chr02:116958389-116959107 (+)

Description Similar to ACP1: Acyl carrier protein 1, chloroplastic

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g54580`	Carrier of the growing fatty acid chain in fatty acid biosynthesis.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_009050 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0009507 chloroplast Cellular Component

GO:0000036 acyl carrier activity Molecular Function

GO:0019904 protein domain specific binding Molecular Function

GO:0031177 phosphopantetheine binding Molecular Function

KEGG gene cross-reference

ath:AT1G54580

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.988

Rank 1 · LXL04_009050 · OH-1004

Mitochondrion0.019

Rank 2 · LXL04_009050 · OH-1004

Nucleus0.014

Rank 3 · LXL04_009050 · OH-1004

Cytoplasm0.011

Rank 4 · LXL04_009050 · OH-1004

Cell membrane0.008

Rank 5 · LXL04_009050 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00550.32PP-binding73-137 aa

PF23297.2ACP_SdgA_C73-137 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_009050	`PF00550.32`	PP-binding	73	137	6.1e-12	46.3
LXL04_009050	`PF23297.2`	ACP_SdgA_C	73	137	7.7e-06	26.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`P25701`	Arabidopsis thaliana	Acyl carrier protein 2, chloroplastic	44.800%	Swiss-Prot	moderate database homology

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