Gene Card
Gene overview
cDNA / CDS / Protein Sequences
1294 bp · LXL04_008717|LXL04_008717|OH1004|cDNA
CTATTTCCTCCAAGTCCAAAAACTTTCACCGTCTTTCTCCCCTTATTTATACCGTCCGCTATTGCCTGCTTTCACTCACACAAAACCTTACTCGATCTGTTCTCTTTCAACAACAATGGCTTCCCCTGTAACTCCAACGCCAATTTTGAAAGATGAACTTGATATCGTCATACCAACGATTCGAAACCTTGATTTCCTGGAGATGTGGAGGCCATTCTTCCAACCTTACCATCTTATCATCGTACAAGATGGCGATCCTT...
1233 bp · LXL04_008717|LXL04_008717|OH1004|CDS
TTGCCTGCTTTCACTCACACAAAACCTTACTCGATCTGTTCTCTTTCAACAACAATGGCTTCCCCTGTAACTCCAACGCCAATTTTGAAAGATGAACTTGATATCGTCATACCAACGATTCGAAACCTTGATTTCCTGGAGATGTGGAGGCCATTCTTCCAACCTTACCATCTTATCATCGTACAAGATGGCGATCCTTCCAAGGTCATCAAAGTCCCAGAAGGCTTCGATTATGAGCTTTATAACCGTAACGATATAAA...
Protein
Download Protein FASTA410 aa · LXL04_008717|LXL04_008717|OH1004|PROTEIN
MPAFTHTKPYSICSLSTTMASPVTPTPILKDELDIVIPTIRNLDFLEMWRPFFQPYHLIIVQDGDPSKVIKVPEGFDYELYNRNDINRILGPKASCISFKDSACRCFGYMVSKKKYIFTIDDDCFIQYTFPQLTPDVNFVTSCTPTVRQFAFSFITHLLHQVAKDPSGNDINALEQHIKNLLSPSTPFFFNTLYDPYREGTDFVRGYPFSLREGVPTAVSHGLWLNIPDYDAPTQLVKPRERNSRFVDAVLTIPKGTLFP...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_008717 |
|---|---|
| TK1151 ID | TkA03G342410 |
| OH-1004 ID | LXL04_008717 |
| Relationship / confidence | Rbh Below Probable Coverage Or Synteny Threshold / Review |
| Protein identity (%) | 90.600 |
| Protein coverage (%) | TK1151 94.118 / OH-1004 98.537Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_008717 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr02:106855116-106858185 (+) | |||||||||
| Description | Similar to UPTG: Probable UDP-arabinopyranose mutase 1 | |||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene ArabidopsisNo hit for this species in the current source table. Rice
| |||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | |||||||||
| GO annotations (OH1004 source) | GO:0009101 glycoprotein biosynthetic process Biological Process GO:0030244 cellulose biosynthetic process Biological Process GO:0033356 UDP-L-arabinose metabolic process Biological Process GO:0071555 cell wall organization Biological Process GO:0071669 plant-type cell wall organization or biogenesis Biological Process GO:0005794 Golgi apparatus Cellular Component GO:0005829 cytosol Cellular Component GO:0009506 plasmodesma Cellular Component GO:0016866 intramolecular transferase activity Molecular Function GO:0052691 UDP-arabinopyranose mutase activity Molecular Function | |||||||||
| KEGG gene cross-reference | dosa:Os03g0599800 dosa:Os07g0604800 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF03214.20RGP29-126 aaPF03214.20RGP162-399 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_008717 | PF03214.20 | RGP | 29 | 126 | 1.9e-172 | 573.8 |
| LXL04_008717 | PF03214.20 | RGP | 162 | 399 | 1.9e-172 | 573.8 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.