LXL04_008670 | RubberDandelionOmics

Gene overview

LXL04_008670

Reference: OH-1004 Chr: Chr02 Coordinates: 105609803-105615351 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

4209 bp · LXL04_008670|LXL04_008670|OH1004|cDNA

ATGGCGCTGTTCAAACGCTTCTTTTATCGTAAGCCGCCGGATCGCCTCCTTGAGATCTCCGAGAGGGTTTACGTTTTTGATTGCTGCTTCTCAAGTGAAGTACTCGAAGAAGATGAATACAAGATGTACATGGGCGGCATTGTTGCAGAACTCCAAGACTACTACCCCGACTCATCTTTCATGGTGTTCAACTTCAGAGAAGGCGACAAAAGGACCCAAATTTCAGACATATTATCTCAATACGACATGACAGTAATGGA...

CDS

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4209 bp · LXL04_008670|LXL04_008670|OH1004|CDS

ATGGCGCTGTTCAAACGCTTCTTTTATCGTAAGCCGCCGGATCGCCTCCTTGAGATCTCCGAGAGGGTTTACGTTTTTGATTGCTGCTTCTCAAGTGAAGTACTCGAAGAAGATGAATACAAGATGTACATGGGCGGCATTGTTGCAGAACTCCAAGACTACTACCCCGACTCATCTTTCATGGTGTTCAACTTCAGAGAAGGCGACAAAAGGACCCAAATTTCAGACATATTATCTCAATACGACATGACAGTAATGGA...

Protein

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1402 aa · LXL04_008670|LXL04_008670|OH1004|PROTEIN

MALFKRFFYRKPPDRLLEISERVYVFDCCFSSEVLEEDEYKMYMGGIVAELQDYYPDSSFMVFNFREGDKRTQISDILSQYDMTVMEYPRQHEGCPMLPLEMIHHFLRSSESWLSLAGQQNVLLMHCERGGWPVLAFMLAALLLFRKQYNGEQKTLDMVYKQAPKELLHLLTPLNPQPSQLRYLQYISRRNLGSDWPPSDTPLALDCIILRVLPVFGEKGCRPVVRVYGQDSSLTTANRSSKLLFSSSKTKKQARYYQPE...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_008670`
TK1151 ID	TkA03G347420
OH-1004 ID	LXL04_008670
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	97.700
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_008670

Location Chr02:105609803-105615351 (-)

Description Similar to FH20: Formin-like protein 20

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`UniProt: Q9FLQ7`	Formin-like protein 20.	No verified direct reference in this release
`At3g32400`	Formin-like protein 17.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os07g0596300`	Formin-like protein 5.	No verified direct reference in this release
`Os08g0280200`	Formin-like protein 6.	No verified direct reference in this release
`UniProt: Q7XWS7`	Formin-like protein 12.	No verified direct reference in this release

Functional annotation source

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Functional annotation source: OH1004 · LXL04_008670 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0005737 cytoplasm Cellular Component

GO:0004721 phosphoprotein phosphatase activity Molecular Function

KEGG gene cross-reference

ath:AT5G07740

dosa:Os07g0596300

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.571

Rank 1 · LXL04_008670 · OH-1004

Cell membrane0.357

Rank 2 · LXL04_008670 · OH-1004

Nucleus0.223

Rank 3 · LXL04_008670 · OH-1004

Golgi apparatus0.056

Rank 4 · LXL04_008670 · OH-1004

Endoplasmic reticulum0.050

Rank 5 · LXL04_008670 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF10409.16PTEN_C2199-334 aa

PF02181.29FH2999-1367 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_008670	`PF10409.16`	PTEN_C2	199	334	4.6e-33	114.5
LXL04_008670	`PF02181.29`	FH2	999	1367	1.9e-114	383.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9FLQ7`	Arabidopsis thaliana	Formin-like protein 20	76.256%	Swiss-Prot	weak database homology
`Q9LH02`	Arabidopsis thaliana	Formin-like protein 17	58.386%	Swiss-Prot	weak database homology
`Q84ZL0`	Oryza sativa subsp. japonica	Formin-like protein 5	71.327%	Swiss-Prot	weak database homology
`Q6ZCX3`	Oryza sativa subsp. japonica	Formin-like protein 6	68.779%	Swiss-Prot	weak database homology
`Q7XWS7`	Oryza sativa subsp. japonica	Formin-like protein 12	69.773%	Swiss-Prot	weak database homology

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