LXL04_008622 | RubberDandelionOmics

Gene overview

LXL04_008622

Reference: OH-1004 Chr: Chr02 Coordinates: 104493098-104497846 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1794 bp · LXL04_008622|LXL04_008622|OH1004|cDNA

ATGCACCATTCCCTCTTTGCATTAAAGAATCATAGCACTATATTCTATAGGAAGATCATCTCAAGTTTTCATAATAATATGGACCAAGAAAGCCAAATCAGCAAATCTAGCATGTATGTCAATTGGAGAAACAAACCAGCTATAGAAGGCCAACATGGTGGCATACTTGCAGCCTCTTTTGTCTTAGTTGTGGAGGTACTGGAGAATCTAGCATACTTGGCGAATGCAAGCAACCTTGTTTTGTATTTGTCAAAATTCAT...

CDS

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1794 bp · LXL04_008622|LXL04_008622|OH1004|CDS

ATGCACCATTCCCTCTTTGCATTAAAGAATCATAGCACTATATTCTATAGGAAGATCATCTCAAGTTTTCATAATAATATGGACCAAGAAAGCCAAATCAGCAAATCTAGCATGTATGTCAATTGGAGAAACAAACCAGCTATAGAAGGCCAACATGGTGGCATACTTGCAGCCTCTTTTGTCTTAGTTGTGGAGGTACTGGAGAATCTAGCATACTTGGCGAATGCAAGCAACCTTGTTTTGTATTTGTCAAAATTCAT...

Protein

Download Protein FASTA

597 aa · LXL04_008622|LXL04_008622|OH1004|PROTEIN

MHHSLFALKNHSTIFYRKIISSFHNNMDQESQISKSSMYVNWRNKPAIEGQHGGILAASFVLVVEVLENLAYLANASNLVLYLSKFMHYSPSSSSNIVSNFMGTAFLLALLGGFLADAFFTTYCIYLISATIELVGLLILTMQARSRSLKPESCLSINRNTKCEGTEGGKEALLFIGLYLVALGVGGIKGSLPPHGAEQFDEKSIEGRKKRSSFFNYYVFCLACGALIAVTFAVWIEDNKGWQWGFGISTLAILISIPIF...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_008622`
TK1151 ID	TkA03G352300
OH-1004 ID	LXL04_008622
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 95.645 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_008622

Location Chr02:104493098-104497846 (+)

Description Similar to NPF4.6: Protein NRT1/ PTR FAMILY 4.6

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g69850`	Low-affinity proton-dependent nitrate transporter.	Identification of an abscisic acid transporter by functional screening using the receptor complex as a sensor.2012 · DOI: 10.1073/pnas.1203567109 Nitrate does not compete with abscisic acid as a substrate of AtNPF4.6/NRT1.2/AIT1 in Arabidopsis.2013 · DOI: 10.4161/psb.26624
`At5g62730`	Protein NRT1/ PTR FAMILY 4.7.	No verified direct reference in this release
`At1g27040`	Involved in abscisic acid transport.	No verified direct reference in this release
`At3g25260`	Involved in (+) and (-)-abscisic acid transport (ABA) and in gibberellin import.	No verified direct reference in this release
`At3g25280`	Involved in abscisic acid transport.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_008622 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0009624 response to nematode Biological Process

GO:0010119 regulation of stomatal movement Biological Process

GO:0042128 nitrate assimilation Biological Process

GO:0055085 transmembrane transport Biological Process

GO:0080168 abscisic acid transport Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005634 nucleus Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0016020 membrane Cellular Component

GO:0015293 symporter activity Molecular Function

GO:0022857 transmembrane transporter activity Molecular Function

KEGG gene cross-reference

ath:AT1G27040

ath:AT1G69850

ath:AT3G25260

ath:AT3G25280

ath:AT5G62730

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.691

Rank 1 · LXL04_008622 · OH-1004

Lysosome / Vacuole0.105

Rank 2 · LXL04_008622 · OH-1004

Endoplasmic reticulum0.103

Rank 3 · LXL04_008622 · OH-1004

Cytoplasm0.076

Rank 4 · LXL04_008622 · OH-1004

Mitochondrion0.036

Rank 5 · LXL04_008622 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF07690.22MFS_175-419 aa

PF00854.28PTR2127-537 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_008622	`PF07690.22`	MFS_1	75	419	4.4e-06	26.6
LXL04_008622	`PF00854.28`	PTR2	127	537	2.1e-101	340.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q8H157`	Arabidopsis thaliana	Protein NRT1/ PTR FAMILY 4.6	64.055%	Swiss-Prot	strong database homology
`Q9FM20`	Arabidopsis thaliana	Protein NRT1/ PTR FAMILY 4.7	62.436%	Swiss-Prot	strong database homology
`Q8VYE4`	Arabidopsis thaliana	Protein NRT1/ PTR FAMILY 4.5	64.134%	Swiss-Prot	strong database homology
`Q9LSF0`	Arabidopsis thaliana	Protein NRT1/ PTR FAMILY 4.1	39.427%	Swiss-Prot	moderate database homology
`Q9LSE8`	Arabidopsis thaliana	Protein NRT1/ PTR FAMILY 4.2	38.612%	Swiss-Prot	moderate database homology

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