Gene Card
Gene overview
cDNA / CDS / Protein Sequences
801 bp · LXL04_007218|LXL04_007218|OH1004|cDNA
ATGCATCAAATTCATCCCCAGATGTACCAAAATATGCAGTTTAATTTCGAGCGAATTTCAATCCACTATCTAATACATGTATCAAAATCTGCAGATCTGTCAATGGAGTCGGATACAGAACCCAAACATCTGATGATTGAGCATAACGTTCCAAATACCACGCATATTGATCCAACAAGAGCTCGATTTCCATGTTGCATAGTGTGGACTCCCCTCCCAGTCATTTCATGGCTCCTCCCTTTCGTAGGTCATGTCGGAAT...
801 bp · LXL04_007218|LXL04_007218|OH1004|CDS
ATGCATCAAATTCATCCCCAGATGTACCAAAATATGCAGTTTAATTTCGAGCGAATTTCAATCCACTATCTAATACATGTATCAAAATCTGCAGATCTGTCAATGGAGTCGGATACAGAACCCAAACATCTGATGATTGAGCATAACGTTCCAAATACCACGCATATTGATCCAACAAGAGCTCGATTTCCATGTTGCATAGTGTGGACTCCCCTCCCAGTCATTTCATGGCTCCTCCCTTTCGTAGGTCATGTCGGAAT...
Protein
Download Protein FASTA266 aa · LXL04_007218|LXL04_007218|OH1004|PROTEIN
MHQIHPQMYQNMQFNFERISIHYLIHVSKSADLSMESDTEPKHLMIEHNVPNTTHIDPTRARFPCCIVWTPLPVISWLLPFVGHVGIGREDGVIVDFAGPNFVSVDNFTFGAVARYIQIGKEKNPISWLPSSTYRNEEEEEFKLVELGKNQLTWDESLKHTTQEYQKQTYSILTCNCHSFVANHLNRLESGPSGWNVVNVAAMILLKGQWVNTSSMLQSYLSFMVMVFLGVTFGGANFLTFLAFVVFVLFGWYLCGTYYL...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_007218 |
|---|---|
| TK1151 ID | TkA03G140940 |
| OH-1004 ID | LXL04_007218 |
| Relationship / confidence | Rbh High Identity Coverage Synteny / Strict |
| Protein identity (%) | 99.600 |
| Protein coverage (%) | TK1151 100.000 / OH-1004 87.218Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_007218 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr02:40071236-40072183 (-) | |||||||||
| Description | Similar to RTH: Protein RTE1-HOMOLOG | |||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | |||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | |||||||||
| GO annotations (OH1004 source) | GO:0009723 response to ethylene Biological Process GO:0010104 regulation of ethylene-activated signaling pathway Biological Process GO:0010105 negative regulation of ethylene-activated signaling pathway Biological Process GO:0023056 positive regulation of signaling Biological Process GO:0000139 Golgi membrane Cellular Component GO:0005739 mitochondrion Cellular Component GO:0005783 endoplasmic reticulum Cellular Component GO:0005789 endoplasmic reticulum membrane Cellular Component GO:0005794 Golgi apparatus Cellular Component GO:0016020 membrane Cellular Component | |||||||||
| KEGG gene cross-reference | ath:AT2G26070 ath:AT3G51040 hsa:84065 mmu:52174 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF05608.19RTE157-208 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_007218 | PF05608.19 | RTE1 | 57 | 208 | 7.5e-61 | 205.3 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.