LXL04_006700 | RubberDandelionOmics

Gene overview

LXL04_006700

Reference: OH-1004 Chr: Chr02 Coordinates: 22529964-22532241 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1392 bp · LXL04_006700|LXL04_006700|OH1004|cDNA

ATGGAATCTGCGGTGGCTGATTTGGACGGCTGGCGTAATCTGAGGGTGGTGGAAACCATCTACGAGGAGGATTCCGGTGACTCTTCTTCCTCCACTACCCCTTCTCTCTCCTCTCCTCCGCCTCCCTCCTCCCCTTCCACAACCTCTCTCCGCTCCCGAGTTAAAGCTTGGTCCTTCAATAATGGAGTTGAAACCAATGTGATGGTACATGTTCAAGAGTCAACTTTTCACTTGCACAAGGATCCTCTGGCGCGATGCAG...

CDS

Download CDS FASTA

1392 bp · LXL04_006700|LXL04_006700|OH1004|CDS

ATGGAATCTGCGGTGGCTGATTTGGACGGCTGGCGTAATCTGAGGGTGGTGGAAACCATCTACGAGGAGGATTCCGGTGACTCTTCTTCCTCCACTACCCCTTCTCTCTCCTCTCCTCCGCCTCCCTCCTCCCCTTCCACAACCTCTCTCCGCTCCCGAGTTAAAGCTTGGTCCTTCAATAATGGAGTTGAAACCAATGTGATGGTACATGTTCAAGAGTCAACTTTTCACTTGCACAAGGATCCTCTGGCGCGATGCAG...

Protein

Download Protein FASTA

463 aa · LXL04_006700|LXL04_006700|OH1004|PROTEIN

MESAVADLDGWRNLRVVETIYEEDSGDSSSSTTPSLSSPPPPSSPSTTSLRSRVKAWSFNNGVETNVMVHVQESTFHLHKDPLARCSRYLKRQLTESSEVSLSPPLKITPHTFTLVADYCYGGNLFITPFNLASLLLAAELLEMHDGPENVENLRRKTEAYYQRTVAVDRDYATVVLKSCMELLPDVETKTGLLTRCVEALSLNRDGGHVLSMFDGVQKLSGEEFRLVVGALHQKVAGSHDLLYRIIDFYFKEVGGKMTE...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_006700`
TK1151 ID	TkA05G391450
OH-1004 ID	LXL04_006700
Relationship / confidence	Rbh High Identity Coverage Local Synteny Minor Chr Pair / Probable
Protein identity (%)	99.800
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_006700

Location Chr02:22529964-22532241 (-)

Description Similar to At3g49900: BTB/POZ domain-containing protein At3g49900

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g49900`	May act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins.	No verified direct reference in this release
`At5g67385`	Acts as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins (Probable).	No verified direct reference in this release
`UniProt: Q682S0`	May act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins (By similarity).	No verified direct reference in this release
`At3g50840`	May act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins.	No verified direct reference in this release
`At5g48130`	May act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_006700 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0007165 signal transduction Biological Process

GO:0009638 phototropism Biological Process

GO:0009904 chloroplast accumulation movement Biological Process

GO:0016567 protein ubiquitination Biological Process

GO:0042742 defense response to bacterium Biological Process

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005777 peroxisome Cellular Component

GO:0005886 plasma membrane Cellular Component

KEGG gene cross-reference

ath:AT2G30520

ath:AT3G49900

ath:AT5G67385

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.505

Rank 1 · LXL04_006700 · OH-1004

Nucleus0.387

Rank 2 · LXL04_006700 · OH-1004

Cell membrane0.228

Rank 3 · LXL04_006700 · OH-1004

Endoplasmic reticulum0.045

Rank 4 · LXL04_006700 · OH-1004

Lysosome / Vacuole0.035

Rank 5 · LXL04_006700 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00651.38BTB59-153 aa

PF03000.20NPH3219-278 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_006700	`PF00651.38`	BTB	59	153	3.6e-11	43.9
LXL04_006700	`PF03000.20`	NPH3	219	278	7.3e-08	33.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9M2W8`	Arabidopsis thaliana	BTB/POZ domain-containing protein At3g49900	44.351%	Swiss-Prot	moderate database homology
`Q66GP0`	Arabidopsis thaliana	BTB/POZ domain-containing protein SR1IP1	35.000%	Swiss-Prot	weak database homology
`Q682S0`	Arabidopsis thaliana	Root phototropism protein 2	34.337%	Swiss-Prot	weak database homology
`Q8LPQ3`	Arabidopsis thaliana	BTB/POZ domain-containing protein At3g50840	32.524%	Swiss-Prot	weak database homology
`Q9LUB9`	Arabidopsis thaliana	BTB/POZ domain-containing protein At5g48130	32.692%	Swiss-Prot	weak database homology

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