LXL04_006538 | RubberDandelionOmics

Gene overview

LXL04_006538

Reference: OH-1004 Chr: Chr02 Coordinates: 13107641-13117284 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

3765 bp · LXL04_006538|LXL04_006538|OH1004|cDNA

ATGACTGACCCTTTTGGTTGTTGGTCAAGCCATGTGAGACACGTGGAGTCCTCTTTCCAAAAATGGCCAATTTGTTTGGCTACCCTGTTGCTTGCTAATAGTGGTCCAATTGGGAGACACCGAGAGACCAAGACCTCGTCTTCCATCCTCACAGATCCAACTCCAAGTTCCAGTTCTTCCTCCAGTATTATGGCTTCTCCTGGTGCTTATGCTAGCTGCTATGACGTCTTTCTAAGCTTTAGAGGCGAAGATACTCGTTA...

CDS

Download CDS FASTA

3765 bp · LXL04_006538|LXL04_006538|OH1004|CDS

ATGACTGACCCTTTTGGTTGTTGGTCAAGCCATGTGAGACACGTGGAGTCCTCTTTCCAAAAATGGCCAATTTGTTTGGCTACCCTGTTGCTTGCTAATAGTGGTCCAATTGGGAGACACCGAGAGACCAAGACCTCGTCTTCCATCCTCACAGATCCAACTCCAAGTTCCAGTTCTTCCTCCAGTATTATGGCTTCTCCTGGTGCTTATGCTAGCTGCTATGACGTCTTTCTAAGCTTTAGAGGCGAAGATACTCGTTA...

Protein

Download Protein FASTA

1254 aa · LXL04_006538|LXL04_006538|OH1004|PROTEIN

MTDPFGCWSSHVRHVESSFQKWPICLATLLLANSGPIGRHRETKTSSSILTDPTPSSSSSSSIMASPGAYASCYDVFLSFRGEDTRYSFTDHLYERLTGAGISTFWDNEFNRGEEVGSEIERAVKESRASIVVLSDNYATSTWCLDELLLIVEQRRKCNHFVLPVFYHVDPSDVRKQNGTFAIKVKASSRWTDQNVNLWMKALKEVADLSGEVLCWYAFLNLLSFQFWYSYLNGHHLNLLIFMCSSRPETEVLKEIVNIL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_006538`
TK1151 ID	TkA03G046600
OH-1004 ID	LXL04_006538
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	99.100
Protein coverage (%)	TK1151 98.340 / OH-1004 61.244 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_006538

Location Chr02:13107641-13117284 (-)

Description Similar to RUN1: Disease resistance protein RUN1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g19510`	Disease resistance protein that cooperates with RPP2A to confer resistance to Hyaloperonospora parasitica isolate Cala2.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_006538 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006952 defense response Biological Process

GO:0007165 signal transduction Biological Process

GO:0019677 NAD+ catabolic process Biological Process

GO:0043068 positive regulation of programmed cell death Biological Process

GO:0050832 defense response to fungus Biological Process

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0003953 NAD+ nucleosidase activity Molecular Function

GO:0042803 protein homodimerization activity Molecular Function

GO:0043531 ADP binding Molecular Function

GO:0050135 NADP+ nucleosidase activity Molecular Function

GO:0061809 NAD+ nucleosidase activity, cyclic ADP-ribose generating Molecular Function

KEGG gene cross-reference No functional description available

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.388

Rank 1 · LXL04_006538 · OH-1004

Nucleus0.362

Rank 2 · LXL04_006538 · OH-1004

Cell membrane0.293

Rank 3 · LXL04_006538 · OH-1004

Endoplasmic reticulum0.085

Rank 4 · LXL04_006538 · OH-1004

Plastid0.054

Rank 5 · LXL04_006538 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01582.26TIR74-212 aa

PF13676.12TIR_276-171 aa

PF00931.29NB-ARC285-392 aa

PF23282.2WHD_ROQ1420-488 aa

PF00403.33HMA1182-1226 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_006538	`PF01582.26`	TIR	74	212	2.4e-41	142.2
LXL04_006538	`PF13676.12`	TIR_2	76	171	2.4e-16	61.1
LXL04_006538	`PF00931.29`	NB-ARC	285	392	2.4e-12	47.5
LXL04_006538	`PF23282.2`	WHD_ROQ1	420	488	2e-14	54.2
LXL04_006538	`PF00403.33`	HMA	1182	1226	1e-05	26.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`F4JT80`	Arabidopsis thaliana	Disease resistance protein RPP2B	32.665%	Swiss-Prot	weak database homology

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