LXL04_006151 | RubberDandelionOmics

Gene overview

LXL04_006151

Reference: OH-1004 Chr: Chr02 Coordinates: 2592500-2593752 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1014 bp · LXL04_006151|LXL04_006151|OH1004|cDNA

ATGGCGCACCCGATCGAAGCCAAAGATTACTGGATTCAAGCAGTTGATTTCATCATGGAAAGAGAACTGAAACAGAAACGGCAAGTTGATGTTGATTCGCTggcaacttcttcttcaggaGGCTATCTTCGAGATCGGAGGCGACAACCTTCTCCGCCGGGTAGATCGCCGGAAGATTCTCCGTTATCAACTATGTCGTCCCTGTCCTCTCTCAGCCATGGATTCTCTCCCGAAAGAGTGGAAGTAGAACCTGAAGTAGA...

CDS

Download CDS FASTA

1014 bp · LXL04_006151|LXL04_006151|OH1004|CDS

ATGGCGCACCCGATCGAAGCCAAAGATTACTGGATTCAAGCAGTTGATTTCATCATGGAAAGAGAACTGAAACAGAAACGGCAAGTTGATGTTGATTCGCTGGCAACTTCTTCTTCAGGAGGCTATCTTCGAGATCGGAGGCGACAACCTTCTCCGCCGGGTAGATCGCCGGAAGATTCTCCGTTATCAACTATGTCGTCCCTGTCCTCTCTCAGCCATGGATTCTCTCCCGAAAGAGTGGAAGTAGAACCTGAAGTAGA...

Protein

Download Protein FASTA

337 aa · LXL04_006151|LXL04_006151|OH1004|PROTEIN

MAHPIEAKDYWIQAVDFIMERELKQKRQVDVDSLATSSSGGYLRDRRRQPSPPGRSPEDSPLSTMSSLSSLSHGFSPERVEVEPEVEPEAESESEGAGGGEGETSHGSPMLDPLPDLSGARATSPAPVTTMNRYVREETVPIKKAEHGAQDGYVGRPPEEARTGGGGQTRRSRPSMGSVNKESSMKKIALGFRIFELLFCLVSLSVMATDKNQGWAFDSFYRYKEFRYSMAVNIVGFAYAVLQGLDLAYQLATGNHYKKR...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_006151`
TK1151 ID	TkA03G012290
OH-1004 ID	LXL04_006151
Relationship / confidence	Sequence Supported Annotation Or Model Conflict / Review
Protein identity (%)	99.400
Protein coverage (%)	TK1151 100.000 / OH-1004 48.071 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_006151

Location Chr02:2592500-2593752 (-)

Description Similar to At5g40300: CASP-like protein 4A1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g40300`	CASP-like protein 4A1.	No verified direct reference in this release
`At2g36330`	CASP-like protein 4A3.	No verified direct reference in this release
`At5g62820`	CASP-like protein 4A2.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_006151 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0005634 nucleus Cellular Component

GO:0005886 plasma membrane Cellular Component

KEGG gene cross-reference

aly:9300896

ath:AT2G36330

ath:AT5G40300

ath:AT5G62820

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.787

Rank 1 · LXL04_006151 · OH-1004

Endoplasmic reticulum0.112

Rank 2 · LXL04_006151 · OH-1004

Cytoplasm0.104

Rank 3 · LXL04_006151 · OH-1004

Nucleus0.100

Rank 4 · LXL04_006151 · OH-1004

Lysosome / Vacuole0.036

Rank 5 · LXL04_006151 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF04535.18CASP_dom183-319 aa

PF01284.29MARVEL189-324 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_006151	`PF04535.18`	CASP_dom	183	319	7.6e-29	101.1
LXL04_006151	`PF01284.29`	MARVEL	189	324	8.3e-06	26.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9FNE8`	Arabidopsis thaliana	CASP-like protein 4A1	43.723%	Swiss-Prot	moderate database homology
`Q84WP5`	Arabidopsis thaliana	CASP-like protein 4A3	37.762%	Swiss-Prot	moderate database homology
`Q501G6`	Arabidopsis thaliana	CASP-like protein 4A2	45.405%	Swiss-Prot	moderate database homology

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