Gene Card
Gene overview
cDNA / CDS / Protein Sequences
1605 bp · LXL04_006094|LXL04_006094|OH1004|cDNA
ATGGCGAATTTGAACTGCATAAGCCGGGCATCATCTCTCATCTTCTTCCTCCCTCGACCCATCTTCTCCTTTCGTACAACACTACTCTACAAGCCATTCATATCACAATCCTCACATTCATATTCCACCACCAAAACTCCATTCCCACTCCAATACGAAATGATACTCACCCGCCCACCTCAAACCACACCCTCCCACCTCCATCGCCGACGCCGGGCACCACCGCAACTCCCGAATTCCAAACCCCCAGATACCGAATT...
1605 bp · LXL04_006094|LXL04_006094|OH1004|CDS
ATGGCGAATTTGAACTGCATAAGCCGGGCATCATCTCTCATCTTCTTCCTCCCTCGACCCATCTTCTCCTTTCGTACAACACTACTCTACAAGCCATTCATATCACAATCCTCACATTCATATTCCACCACCAAAACTCCATTCCCACTCCAATACGAAATGATACTCACCCGCCCACCTCAAACCACACCCTCCCACCTCCATCGCCGACGCCGGGCACCACCGCAACTCCCGAATTCCAAACCCCCAGATACCGAATT...
Protein
Download Protein FASTA534 aa · LXL04_006094|LXL04_006094|OH1004|PROTEIN
MANLNCISRASSLIFFLPRPIFSFRTTLLYKPFISQSSHSYSTTKTPFPLQYEMILTRPPQTTPSHLHRRRRAPPQLPNSKPPDTELGFDDWVDMKLTSEPAPTSPTPNEDQKQPALLNEDIEMDKSKRKYYNKRQKRMYGSDSEEDEGKHENKYIELNQEVVKLRTLHKREEELYFYDAFAYPWEKDKHYKMVYQLEKKFFPDQCFDKAFLEPGQSNDDKKKKKKKIVNVRGLDDKKDEKDEKGLVFFEEEKANKDVKM...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_006094 |
|---|---|
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_006094 |
|---|---|
| Location | Chr02:1638876-1642575 (-) |
| Description | Similar to truB: tRNA pseudouridine synthase B (Flavobacterium johnsoniae (strain ATCC 17061 / DSM 2064 / UW101) |
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene ArabidopsisNo hit for this species in the current source table. RiceNo hit for this species in the current source table. |
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · |
| GO annotations (OH1004 source) | GO:0031119 tRNA pseudouridine synthesis Biological Process GO:1990481 mRNA pseudouridine synthesis Biological Process GO:0003723 RNA binding Molecular Function GO:0160148 tRNA pseudouridine(55) synthase activity Molecular Function |
| KEGG gene cross-reference | aau:AAur_1565 art:Arth_1424 cpe:CPE1683 fjo:Fjoh_0570 tfu:Tfu_0781 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF01509.24TruB_N336-486 aaPF16198.11TruB_C_2487-527 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_006094 | PF01509.24 | TruB_N | 336 | 486 | 8.8e-54 | 182.7 |
| LXL04_006094 | PF16198.11 | TruB_C_2 | 487 | 527 | 1.5e-06 | 29.0 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.
No result was found for this query.