LXL04_005889 | RubberDandelionOmics

Gene overview

LXL04_005889

Reference: OH-1004 Chr: Chr01 Coordinates: 175249208-175250325 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

528 bp · LXL04_005889|LXL04_005889|OH1004|cDNA

ATGGGGGAGGAAAAACAAGAAACCGAGAAAGATATGGCTTTAGAACCCGAATTGAAATCATCAGATCATGTAACATCTCCACCACCACCGAAACTCAAATCAAGTTTGGTAGCAACACCACCACCGGAAAACATAAAACCTCCTCATGGTGGTGAAAATAGTGGACTCGAAATAGTAGTTGCAGAGAAGCGAATGGCGCTAATTAAAGCGTGGGAGGAAAACGAAAAAACAAAGGCGGACAACAAGGCACACACAAAAAA...

CDS

Download CDS FASTA

528 bp · LXL04_005889|LXL04_005889|OH1004|CDS

ATGGGGGAGGAAAAACAAGAAACCGAGAAAGATATGGCTTTAGAACCCGAATTGAAATCATCAGATCATGTAACATCTCCACCACCACCGAAACTCAAATCAAGTTTGGTAGCAACACCACCACCGGAAAACATAAAACCTCCTCATGGTGGTGAAAATAGTGGACTCGAAATAGTAGTTGCAGAGAAGCGAATGGCGCTAATTAAAGCGTGGGAGGAAAACGAAAAAACAAAGGCGGACAACAAGGCACACACAAAAAA...

Protein

Download Protein FASTA

175 aa · LXL04_005889|LXL04_005889|OH1004|PROTEIN

MGEEKQETEKDMALEPELKSSDHVTSPPPPKLKSSLVATPPPENIKPPHGGENSGLEIVVAEKRMALIKAWEENEKTKADNKAHTKKTEIGAWENTKKAVIEADLKQIEENIEIEKVKQREKMKNKMAAIHKEAQEKRAIVEAKRGEDIIKAKEAAAKFHATGTLPNKLFKCFGY

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_005889`
TK1151 ID	TkA01G009330
OH-1004 ID	LXL04_005889
Relationship / confidence	Rbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)	89.700
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_005889

Location Chr01:175249208-175250325 (+)

Description Similar to REM1.4: Remorin 1.4

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g23750`	Remorin 1.4.	No verified direct reference in this release
`At3g61260`	Uncharacterized protein At3g61260.	No verified direct reference in this release
`At2g45820`	Exhibits a non sequence-specific DNA-binding activity.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os07g0569100`	Functions in abscisic acid (ABA) signaling downstream of BZIP23.	OsREM4.1 Interacts with OsSERK1 to Coordinate the Interlinking between Abscisic Acid and Brassinosteroid Signaling in Rice.2016 · DOI: 10.1016/j.devcel.2016.06.011

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_005889 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0007267 cell-cell signaling Biological Process

GO:0009651 response to salt stress Biological Process

GO:0009738 abscisic acid-activated signaling pathway Biological Process

GO:0009751 response to salicylic acid Biological Process

GO:0010555 response to mannitol Biological Process

GO:0051607 defense response to virus Biological Process

GO:0051665 membrane raft localization Biological Process

GO:1900458 negative regulation of brassinosteroid mediated signaling pathway Biological Process

GO:0000325 plant-type vacuole Cellular Component

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005829 cytosol Cellular Component

KEGG gene cross-reference

ath:AT2G45820

ath:AT3G61260

ath:AT5G23750

dosa:Os07g0569100

sot:102577743

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.592

Rank 1 · LXL04_005889 · OH-1004

Cytoplasm0.273

Rank 2 · LXL04_005889 · OH-1004

Nucleus0.217

Rank 3 · LXL04_005889 · OH-1004

Endoplasmic reticulum0.048

Rank 4 · LXL04_005889 · OH-1004

Mitochondrion0.044

Rank 5 · LXL04_005889 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF03763.19Remorin_C63-168 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_005889	`PF03763.19`	Remorin_C	63	168	5.5e-30	104.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9FFA5`	Arabidopsis thaliana	Remorin 1.4	60.331%	Swiss-Prot	moderate database homology
`Q9M2D8`	Arabidopsis thaliana	Uncharacterized protein At3g61260	46.541%	Swiss-Prot	moderate database homology
`O80837`	Arabidopsis thaliana	Remorin	45.912%	Swiss-Prot	moderate database homology
`Q7XII4`	Oryza sativa subsp. japonica	Remorin 4.1	29.412%	Swiss-Prot	weak database homology

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