Gene Card
Gene overview
cDNA / CDS / Protein Sequences
3411 bp · LXL04_005069|LXL04_005069|OH1004|cDNA
ATGGACGGACTTCGTAAACACCAGGTCTCGCTGCGGGGTTCTAGTGCGAAAGAGATCACTAGGGATGCCTTACTTGAGAAGGTTACGCAGGAGAGGGAATTTCGCAATTACATGCGGCGAGCCACCGCAGCTTCACTATTTATTCAGAGGGTTTGGAGACGCTATGCTTCAACTAAGATGGCAGCTGCACATCTTCGAGAAGAGTGGCAAGAGATGCTTAAATGTCATCCAGTTCCTATCACCAGAGCTTGGATTTCCAA...
3411 bp · LXL04_005069|LXL04_005069|OH1004|CDS
ATGGACGGACTTCGTAAACACCAGGTCTCGCTGCGGGGTTCTAGTGCGAAAGAGATCACTAGGGATGCCTTACTTGAGAAGGTTACGCAGGAGAGGGAATTTCGCAATTACATGCGGCGAGCCACCGCAGCTTCACTATTTATTCAGAGGGTTTGGAGACGCTATGCTTCAACTAAGATGGCAGCTGCACATCTTCGAGAAGAGTGGCAAGAGATGCTTAAATGTCATCCAGTTCCTATCACCAGAGCTTGGATTTCCAA...
Protein
Download Protein FASTA1136 aa · LXL04_005069|LXL04_005069|OH1004|PROTEIN
MDGLRKHQVSLRGSSAKEITRDALLEKVTQEREFRNYMRRATAASLFIQRVWRRYASTKMAAAHLREEWQEMLKCHPVPITRAWISNNLLKPFLFFIRISATRHQRFEDRDVDCMQICFKILLESINSSDPQRNFCTLATSTIEDRTTWIYQTKKLISLCLLILSECDYSSYQEKHQYIVLTSMAMRFVVSLTDPKTWKTFDDITLPETHTAVKDLVSYMCNEKSHLYISIRRYLTRLDVPFSSTANHTDDRFLITASAI...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_005069 |
|---|---|
| TK1151 ID | TkA01G090080 |
| OH-1004 ID | LXL04_005069 |
| Relationship / confidence | Rbh Below Probable Coverage Or Synteny Threshold / Review |
| Protein identity (%) | 98.600 |
| Protein coverage (%) | TK1151 60.397 / OH-1004 96.919Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_005069 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr01:154172620-154178354 (-) | |||||||||
| Description | Similar to UPL7: E3 ubiquitin-protein ligase UPL7 | |||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | |||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | |||||||||
| GO annotations (OH1004 source) | GO:0000209 protein polyubiquitination Biological Process GO:0006511 ubiquitin-dependent protein catabolic process Biological Process GO:0005634 nucleus Cellular Component GO:0005739 mitochondrion Cellular Component GO:0061630 ubiquitin protein ligase activity Molecular Function | |||||||||
| KEGG gene cross-reference | ath:AT3G17205 ath:AT3G53090 hsa:89910 mmu:117146 xtr:780337 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF00632.31HECT823-1136 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_005069 | PF00632.31 | HECT | 823 | 1136 | 1.6e-95 | 321.0 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.