LXL04_005007 | RubberDandelionOmics

Gene overview

LXL04_005007

Reference: OH-1004 Chr: Chr01 Coordinates: 152804663-152807848 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2121 bp · LXL04_005007|LXL04_005007|OH1004|cDNA

ATGCATGAACTTTTAATCCTTTTAAGAGGAAAAAATATTTACTCAAGCTTCGACTGTAAGTCAGGTTTCTGGCAAGTCCTACTTGATGAAGAATCGCAGCTTCTCACTACTTTTATATGTCCTGACGGACTCTTTCAATGGAAAGTACTACCCTTTGGACTTAAACAAGCTCCTAGTATTTTTCAGAGACACATGCAGAACGCCCTTCGAGGACTTGAAAGTTTCTGCACTgtatacgttgatgacatcataGTCTTCAG...

CDS

Download CDS FASTA

2121 bp · LXL04_005007|LXL04_005007|OH1004|CDS

ATGCATGAACTTTTAATCCTTTTAAGAGGAAAAAATATTTACTCAAGCTTCGACTGTAAGTCAGGTTTCTGGCAAGTCCTACTTGATGAAGAATCGCAGCTTCTCACTACTTTTATATGTCCTGACGGACTCTTTCAATGGAAAGTACTACCCTTTGGACTTAAACAAGCTCCTAGTATTTTTCAGAGACACATGCAGAACGCCCTTCGAGGACTTGAAAGTTTCTGCACTGTATACGTTGATGACATCATAGTCTTCAG...

Protein

Download Protein FASTA

706 aa · LXL04_005007|LXL04_005007|OH1004|PROTEIN

MHELLILLRGKNIYSSFDCKSGFWQVLLDEESQLLTTFICPDGLFQWKVLPFGLKQAPSIFQRHMQNALRGLESFCTVYVDDIIVFSKNEQEHYVHVTQVLRTILKYGIILSQKKGHVFKTKINFLGLEINEGTHCPQKYILEHLHDFPNVIEDKKQLQIFLGVLTYAETYIEKLAAMRKPLHAKLKKYVIWNWSNTDTDYIKKIKKVLIKFPKLYLPNIEDNLIIETDASDEFWGGVLKAKNSKNEEQFCSLQNGRPQI...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_005007`
TK1151 ID	TkA04G376110
OH-1004 ID	LXL04_005007
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	42.600
Protein coverage (%)	TK1151 25.866 / OH-1004 29.462 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID	`LXL04_005007`
Location	Chr01:152804663-152807848 (-)
Description	Similar to ORF V: Enzymatic polyprotein (Figwort mosaic virus (strain DxS)
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_005007` · GCA_047496595.1_OSU_TarKok_2.0.
GO annotations (OH1004 source)	GO:0006508 proteolysis Biological Process GO:0003964 RNA-directed DNA polymerase activity Molecular Function GO:0004190 aspartic-type endopeptidase activity Molecular Function GO:0004519 endonuclease activity Molecular Function
KEGG gene cross-reference	vg:1489542 vg:935429 vg:940156 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.572

Rank 1 · LXL04_005007 · OH-1004

Nucleus0.309

Rank 2 · LXL04_005007 · OH-1004

Mitochondrion0.138

Rank 3 · LXL04_005007 · OH-1004

Cell membrane0.081

Rank 4 · LXL04_005007 · OH-1004

Endoplasmic reticulum0.045

Rank 5 · LXL04_005007 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00078.33RVT_18-130 aa

PF17919.8RT_RNaseH_2194-251 aa

PF31029.1Cauli_VI_C451-673 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_005007	`PF00078.33`	RVT_1	8	130	9.8e-32	111.2
LXL04_005007	`PF17919.8`	RT_RNaseH_2	194	251	1.6e-07	32.0
LXL04_005007	`PF31029.1`	Cauli_VI_C	451	673	3.3e-70	236.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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