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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

LXL04_004907
Reference: OH-1004 Chr: Chr01 Coordinates: 149962337-149965092 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1920 bp · LXL04_004907|LXL04_004907|OH1004|cDNA

ATGAACACCGTCTTCGAAGATGATGAAAAGGATCCAGAAATGGGTTCAGATTCAGGCACGAATCCATTTCTTCAAAGATCTCCCTCTCCTTCCCCTTCCCAAAGGTCAATCGACTCGTTCCCTGCTCCTTCCCCAAGAACACCTTCATTAGTGGTATCCAACTCCGGTAGGTTATCATATTCATCATACACCGGAAAACCGGGCACAACTCCAAGTTTTGGGAACATGTACGGATCAAATTCAAGCAAGTCGCTATCATA...

CDS

Download CDS FASTA

1920 bp · LXL04_004907|LXL04_004907|OH1004|CDS

ATGAACACCGTCTTCGAAGATGATGAAAAGGATCCAGAAATGGGTTCAGATTCAGGCACGAATCCATTTCTTCAAAGATCTCCCTCTCCTTCCCCTTCCCAAAGGTCAATCGACTCGTTCCCTGCTCCTTCCCCAAGAACACCTTCATTAGTGGTATCCAACTCCGGTAGGTTATCATATTCATCATACACCGGAAAACCGGGCACAACTCCAAGTTTTGGGAACATGTACGGATCAAATTCAAGCAAGTCGCTATCATA...

Protein

Download Protein FASTA

639 aa · LXL04_004907|LXL04_004907|OH1004|PROTEIN

MNTVFEDDEKDPEMGSDSGTNPFLQRSPSPSPSQRSIDSFPAPSPRTPSLVVSNSGRLSYSSYTGKPGTTPSFGNMYGSNSSKSLSYSSSSNTWGFSSSGKSLSGKSLMSQSGGKKKYVKQVTGKHKDTELHLAAKRGDVMAVKLIIDEINEQMLRTMTGVDFDAEVAEIRASVVNEVNELGETALFTAAERGCVEVVKELLPYTTKQGLCLKNRSGFDPLHIAAREGHQEIVQILLDHDPDLSKTVGHSNSTPLTSAAV...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDLXL04_004907
TK1151 IDTkA01G098140
OH-1004 IDLXL04_004907
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)99.800
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionOH-1004 / GCA_047496595.1_OSU_TarKok_2.0
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDLXL04_004907
LocationChr01:149962337-149965092 (+)
DescriptionSimilar to ITN1: Ankyrin repeat-containing protein ITN1
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g12360 Involved in salt stress tolerance.
ITN1, a novel gene encoding an ankyrin-repeat protein that affects the ABA-mediated production of reactive oxygen species and is involved in salt-stress tolerance in Arabidopsis thaliana.2008 · DOI: 10.1111/j.1365-313x.2008.03614.x
At2g01680 Ankyrin repeat-containing protein At2g01680. No verified direct reference in this release
At5g02620 Ankyrin repeat-containing protein At5g02620. No verified direct reference in this release

Rice

Reference gene IDPossible functionPapers / DOI
Os01g0837000 Involved in salt stress tolerance. No verified direct reference in this release
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_004907 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)
GO:0009651 response to salt stress Biological Process
GO:0038180 nerve growth factor signaling pathway Biological Process
GO:1990090 cellular response to nerve growth factor stimulus Biological Process
GO:0005634 nucleus Cellular Component
GO:0005737 cytoplasm Cellular Component
GO:0005770 late endosome Cellular Component
GO:0005783 endoplasmic reticulum Cellular Component
GO:0005829 cytosol Cellular Component
GO:0005886 plasma membrane Cellular Component
GO:0016020 membrane Cellular Component
GO:0032991 protein-containing complex Cellular Component
GO:0019887 protein kinase regulator activity Molecular Function
KEGG gene cross-reference
ath:AT2G01680
ath:AT3G12360
ath:AT5G02620
dosa:Os01g0837000
rno:116478
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.827
Rank 1 · LXL04_004907 · OH-1004
Cytoplasm0.099
Rank 2 · LXL04_004907 · OH-1004
Nucleus0.074
Rank 3 · LXL04_004907 · OH-1004
Endoplasmic reticulum0.067
Rank 4 · LXL04_004907 · OH-1004
Lysosome / Vacuole0.031
Rank 5 · LXL04_004907 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF12796.14Ank_2131-244 aa
PF24521.3Ank_KRIT1183-274 aa
PF13637.13Ank_4186-237 aa
PF12796.14Ank_2213-274 aa
PF00023.37Ank217-242 aa
PF13637.13Ank_4221-267 aa
PF12796.14Ank_2246-306 aa
PF13637.13Ank_4255-305 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
LXL04_004907PF12796.14Ank_21312447.7e-56187.4
LXL04_004907PF24521.3Ank_KRIT11832742.2e-1454.1
LXL04_004907PF13637.13Ank_41862377.2e-31106.3
LXL04_004907PF12796.14Ank_22132747.7e-56187.4
LXL04_004907PF00023.37Ank2172423.4e-38128.2
LXL04_004907PF13637.13Ank_42212677.2e-31106.3
LXL04_004907PF12796.14Ank_22463067.7e-56187.4
LXL04_004907PF13637.13Ank_42553057.2e-31106.3
LXL04_004907PF12796.14Ank_22573447.7e-56187.4
LXL04_004907PF00023.37Ank2843053.4e-38128.2
LXL04_004907PF13637.13Ank_42893397.2e-31106.3
LXL04_004907PF13857.13Ank_53053456e-32110.1
LXL04_004907PF00023.37Ank3193453.4e-38128.2
LXL04_004907PF12796.14Ank_23323957.7e-56187.4
LXL04_004907PF13857.13Ank_53473936e-32110.1
LXL04_004907PF00023.37Ank3543843.4e-38128.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9C7A2Arabidopsis thalianaAnkyrin repeat-containing protein ITN160.930%Swiss-Protstrong database homology
Q9ZU96Arabidopsis thalianaAnkyrin repeat-containing protein At2g0168041.336%Swiss-Protmoderate database homology
Q6AWW5Arabidopsis thalianaAnkyrin repeat-containing protein At5g0262041.131%Swiss-Protmoderate database homology
A2CIR5Oryza sativa subsp. japonicaAnkyrin repeat-containing protein NPR462.942%Swiss-Protstrong database homology

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