LXL04_004651 | RubberDandelionOmics

Gene overview

LXL04_004651

Reference: OH-1004 Chr: Chr01 Coordinates: 142420119-142420736 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

366 bp · LXL04_004651|LXL04_004651|OH1004|cDNA

ATGTATGTTTCATGTCCCAGAATGAAGGTTGTCGCCGCCTATTTGTTGGCTCTCTTGGGAGGTAACACTACCCCATCCGCTGAAGATTTGAAGAAAATCCTCGGCTCAGTTGGAGCTGATGCCGATGATGATAGAATTGAATTGCTCTTGTCTGAGGTCAAGGGTAAAGATATCACCGAGTTGGTTGCAGCCGGAAGGGAAAAGTTAGCTTCAGTTCCttccggtggtggtggtgttgcCATTGCCGCCTCCGCTGGTGG...

CDS

Download CDS FASTA

366 bp · LXL04_004651|LXL04_004651|OH1004|CDS

ATGTATGTTTCATGTCCCAGAATGAAGGTTGTCGCCGCCTATTTGTTGGCTCTCTTGGGAGGTAACACTACCCCATCCGCTGAAGATTTGAAGAAAATCCTCGGCTCAGTTGGAGCTGATGCCGATGATGATAGAATTGAATTGCTCTTGTCTGAGGTCAAGGGTAAAGATATCACCGAGTTGGTTGCAGCCGGAAGGGAAAAGTTAGCTTCAGTTCCTTCCGGTGGTGGTGGTGTTGCCATTGCCGCCTCCGCTGGTGG...

Protein

Download Protein FASTA

121 aa · LXL04_004651|LXL04_004651|OH1004|PROTEIN

MYVSCPRMKVVAAYLLALLGGNTTPSAEDLKKILGSVGADADDDRIELLLSEVKGKDITELVAAGREKLASVPSGGGGVAIAASAGGGAAPAAAAAAEPKKEEKVEEKEESDDDMGFSLFD

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_004651`
TK1151 ID	TkA01G128580
OH-1004 ID	LXL04_004651
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 94.215 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_004651

Location Chr01:142420119-142420736 (-)

Description Similar to RPP2B: 60S acidic ribosomal protein P2B

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g44590`	Plays an important role in the elongation step of protein synthesis.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_004651 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0002182 cytoplasmic translational elongation Biological Process

GO:0006633 fatty acid biosynthetic process Biological Process

GO:0008610 lipid biosynthetic process Biological Process

GO:0005829 cytosol Cellular Component

GO:0005840 ribosome Cellular Component

GO:0022625 cytosolic large ribosomal subunit Cellular Component

GO:0022626 cytosolic ribosome Cellular Component

GO:0099503 secretory vesicle Cellular Component

GO:0000036 acyl carrier activity Molecular Function

GO:0003735 structural constituent of ribosome Molecular Function

GO:0044877 protein-containing complex binding Molecular Function

KEGG gene cross-reference

ath:AT3G44590

zma:542323

zma:542340

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.849

Rank 1 · LXL04_004651 · OH-1004

Nucleus0.184

Rank 2 · LXL04_004651 · OH-1004

Endoplasmic reticulum0.112

Rank 3 · LXL04_004651 · OH-1004

Cell membrane0.064

Rank 4 · LXL04_004651 · OH-1004

Golgi apparatus0.046

Rank 5 · LXL04_004651 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00428.25Ribosomal_60s25-120 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_004651	`PF00428.25`	Ribosomal_60s	25	120	1.1e-24	87.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9LXM8`	Arabidopsis thaliana	Large ribosomal subunit protein P2w	65.789%	Swiss-Prot	strong database homology

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