LXL04_003225 | RubberDandelionOmics

Gene overview

LXL04_003225

Reference: OH-1004 Chr: Chr01 Coordinates: 71454890-71458652 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1119 bp · LXL04_003225|LXL04_003225|OH1004|cDNA

ATGAGGTTAGGGTACGTAATCGGAACAGTAGATCCTTTTTCTATTGCCCCAATGTTCGATGGGAATGGTAGATCCTTTTTCTATTGCAGGAGAACGTTGAATAAATCTACCAATATCTCTGCATCTCTCCCGTATCTCGGCATTCTCTACCCATTTAACCTAAATATCCTAACGGTTTTAGACGAATCTGAATCCGGGAGGGTGGATTTAGGTATGTTCTTTGCGATTCTATCCCCGATATGTGGtggttcgccggaaaa...

CDS

Download CDS FASTA

1119 bp · LXL04_003225|LXL04_003225|OH1004|CDS

ATGAGGTTAGGGTACGTAATCGGAACAGTAGATCCTTTTTCTATTGCCCCAATGTTCGATGGGAATGGTAGATCCTTTTTCTATTGCAGGAGAACGTTGAATAAATCTACCAATATCTCTGCATCTCTCCCGTATCTCGGCATTCTCTACCCATTTAACCTAAATATCCTAACGGTTTTAGACGAATCTGAATCCGGGAGGGTGGATTTAGGTATGTTCTTTGCGATTCTATCCCCGATATGTGGTGGTTCGCCGGAAAA...

Protein

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372 aa · LXL04_003225|LXL04_003225|OH1004|PROTEIN

MRLGYVIGTVDPFSIAPMFDGNGRSFFYCRRTLNKSTNISASLPYLGILYPFNLNILTVLDESESGRVDLGMFFAILSPICGGSPEKRKRVAFDSLLWWPVNEQQQEGKGKIIRVDALRYIKLLRLIYIPSQGTSELLEIHGETDDSMVSFTEFTDMFDDSDWGFGILPTLMKLEFSDRNRHGKQSCGVCRYPIIGSRFKEMKSGFSLCGQCYSEGKVPTSFKFDEYRFKEYVKESEAVKDKCMWFSLQKSSSGTATNIQ...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_003225`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_003225

Location Chr01:71454890-71458652 (-)

Description Similar to At2g32450: Uncharacterized TPR repeat-containing protein At2g32450

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g32450`	Uncharacterized TPR repeat-containing protein At2g32450.	No verified direct reference in this release
`At1g05150`	Uncharacterized TPR repeat-containing protein At1g05150.	No verified direct reference in this release
`At1g14840`	Plant-specific protein that interact with microtubules.	No verified direct reference in this release
`At2g01750`	Plant-specific protein that interact with microtubules.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os02g0736100`	Plant-specific protein that interact with microtubules.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_003225 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0007010 cytoskeleton organization Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005768 endosome Cellular Component

GO:0005783 endoplasmic reticulum Cellular Component

GO:0005794 Golgi apparatus Cellular Component

GO:0005802 trans-Golgi network Cellular Component

GO:0005874 microtubule Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009506 plasmodesma Cellular Component

GO:0010005 cortical microtubule, transverse to long axis Cellular Component

KEGG gene cross-reference

ath:AT1G05150

ath:AT1G14840

ath:AT2G01750

ath:AT2G32450

dosa:Os02g0736100

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.435

Rank 1 · LXL04_003225 · OH-1004

Nucleus0.307

Rank 2 · LXL04_003225 · OH-1004

Cell membrane0.145

Rank 3 · LXL04_003225 · OH-1004

Mitochondrion0.115

Rank 4 · LXL04_003225 · OH-1004

Endoplasmic reticulum0.101

Rank 5 · LXL04_003225 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF07058.17MAP70291-339 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_003225	`PF07058.17`	MAP70	291	339	1.7e-16	60.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q8S8L9`	Arabidopsis thaliana	Uncharacterized TPR repeat-containing protein At2g32450	56.911%	Swiss-Prot	moderate database homology
`O23052`	Arabidopsis thaliana	Uncharacterized TPR repeat-containing protein At1g05150	58.796%	Swiss-Prot	moderate database homology
`Q9LQU7`	Arabidopsis thaliana	Microtubule-associated protein 70-4	62.105%	Swiss-Prot	weak database homology
`Q9ZUA3`	Arabidopsis thaliana	Microtubule-associated protein 70-3	68.831%	Swiss-Prot	weak database homology
`Q6Z746`	Oryza sativa subsp. japonica	Microtubule-associated protein 70-2	56.977%	Swiss-Prot	weak database homology

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