LXL04_003034 | RubberDandelionOmics

Gene overview

LXL04_003034

Reference: OH-1004 Chr: Chr01 Coordinates: 65386113-65404532 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2352 bp · LXL04_003034|LXL04_003034|OH1004|cDNA

ATGAAAGATGAGTATAACACACGGTCTATAATTCACCATAACCTTCATGGATTCATAAATTCATTCTCAAATGTAATACTGCAGATCTCTGAGTCTCTGAAAGTGAAGGAAATAATGTGGAAGCTTCAGCTGTCAAAAGGTGACGATGATCCAGATGTCAGAAGCGTGAATCATCATATGGGTAGGCAATATTGGGAATTCGATCCACATGCAGGAACTCCAGAAGAGCGATCTCAAATCGAGAGCATGCGTGAAGAATT...

CDS

Download CDS FASTA

2352 bp · LXL04_003034|LXL04_003034|OH1004|CDS

ATGAAAGATGAGTATAACACACGGTCTATAATTCACCATAACCTTCATGGATTCATAAATTCATTCTCAAATGTAATACTGCAGATCTCTGAGTCTCTGAAAGTGAAGGAAATAATGTGGAAGCTTCAGCTGTCAAAAGGTGACGATGATCCAGATGTCAGAAGCGTGAATCATCATATGGGTAGGCAATATTGGGAATTCGATCCACATGCAGGAACTCCAGAAGAGCGATCTCAAATCGAGAGCATGCGTGAAGAATT...

Protein

Download Protein FASTA

783 aa · LXL04_003034|LXL04_003034|OH1004|PROTEIN

MKDEYNTRSIIHHNLHGFINSFSNVILQISESLKVKEIMWKLQLSKGDDDPDVRSVNHHMGRQYWEFDPHAGTPEERSQIESMREEFTRNRLNVTHSSDLLMRFQLTSKNRGGMEKSHVKEEGGDDEVVVKTLKKALKFYSSLQGEDGSWPADYGGPLFLLPGLIIGLHVMGMKDFVLSIEQQNEICRYLYNHQNVDGGWGLHIEGSSTMLSTALNYVSLRLLGEEIDGGKGAMTKAQSWILKHGSVTHIPSWGKLWLSV...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_003034`
TK1151 ID	TkA01G402800
OH-1004 ID	LXL04_003034
Relationship / confidence	Rbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)	98.000
Protein coverage (%)	TK1151 98.579 / OH-1004 69.987 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_003034

Location Chr01:65386113-65404532 (-)

Description Similar to OSCPNX1: Cycloartenol Synthase

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g07050`	Converts oxidosqualene to cycloartenol and 1% parkeol.	Allelic mutant series reveal distinct functions for Arabidopsis cycloartenol synthase 1 in cell viability and plastid biogenesis.2008 · DOI: 10.1073/pnas.0712190105 Isolation of an Arabidopsis thaliana gene encoding cycloartenol synthase by functional expression in a yeast mutant lacking lanosterol synthase by the use of a chromatographic screen.1993 · DOI: 10.1073/pnas.90.24.11628

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_003034 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006694 steroid biosynthetic process Biological Process

GO:0009555 pollen development Biological Process

GO:0010027 thylakoid membrane organization Biological Process

GO:0010686 tetracyclic triterpenoid biosynthetic process Biological Process

GO:0016104 triterpenoid biosynthetic process Biological Process

GO:0016126 sterol biosynthetic process Biological Process

GO:0019745 pentacyclic triterpenoid biosynthetic process Biological Process

GO:0000325 plant-type vacuole Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0005773 vacuole Cellular Component

GO:0005811 lipid droplet Cellular Component

GO:0016020 membrane Cellular Component

KEGG gene cross-reference

ath:AT2G07050

rcu:8262543

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.356

Rank 1 · LXL04_003034 · OH-1004

Peroxisome0.243

Rank 2 · LXL04_003034 · OH-1004

Endoplasmic reticulum0.129

Rank 3 · LXL04_003034 · OH-1004

Cytoplasm0.128

Rank 4 · LXL04_003034 · OH-1004

Cell membrane0.052

Rank 5 · LXL04_003034 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13249.13SQHop_cyclase_N134-437 aa

PF13243.13SQHop_cyclase_C449-779 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_003034	`PF13249.13`	SQHop_cyclase_N	134	437	7.5e-40	137.6
LXL04_003034	`PF13243.13`	SQHop_cyclase_C	449	779	1.1e-49	170.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`P38605`	Arabidopsis thaliana	Cycloartenol synthase	64.800%	Swiss-Prot	strong database homology

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