LXL04_002984 | RubberDandelionOmics

Gene overview

LXL04_002984

Reference: OH-1004 Chr: Chr01 Coordinates: 64058800-64062478 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2475 bp · LXL04_002984|LXL04_002984|OH1004|cDNA

ATGTTGTGTCATTATAGGAGGTTTCTAACCACTGAAGATATGTTTAGAATTATAATTCTATTGGGTCTTTTGGTTATCGGGAAAGCAGAGATTTATATTGTAACAATTGAAGGACAGCCGGTTATAAGTTACACTGGCGGCGTTAGTGGTTTTAAAGCGACCGCCGTTGAATCCGATGAGACACTTGATGTCACCAGTGAATTGGTTTCATCATACGCCCGCCACCTGGAACTGAAGCATGATACTCTTCTTGAAACTTT...

CDS

Download CDS FASTA

2475 bp · LXL04_002984|LXL04_002984|OH1004|CDS

ATGTTGTGTCATTATAGGAGGTTTCTAACCACTGAAGATATGTTTAGAATTATAATTCTATTGGGTCTTTTGGTTATCGGGAAAGCAGAGATTTATATTGTAACAATTGAAGGACAGCCGGTTATAAGTTACACTGGCGGCGTTAGTGGTTTTAAAGCGACCGCCGTTGAATCCGATGAGACACTTGATGTCACCAGTGAATTGGTTTCATCATACGCCCGCCACCTGGAACTGAAGCATGATACTCTTCTTGAAACTTT...

Protein

Download Protein FASTA

824 aa · LXL04_002984|LXL04_002984|OH1004|PROTEIN

MLCHYRRFLTTEDMFRIIILLGLLVIGKAEIYIVTIEGQPVISYTGGVSGFKATAVESDETLDVTSELVSSYARHLELKHDTLLETLFNQGNYKKLYSYKHLINGFAVDLSPEQAETLRGANGVKSVDKDWKVRKLTTHTPRFLGLPKGVWPMGGGFGRAGEDIVIGFIDSGIFPHHPSFGNHNSEPYGPIPKFRGKCEVDSDTKKSFCNGKIVGARHFAQAAIAAGVFNPSVDFASPLDGDGHGSHTAAIAAGNNGIPV...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_002984`
TK1151 ID	TkA01G407630
OH-1004 ID	LXL04_002984
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	99.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_002984

Location Chr01:64058800-64062478 (+)

Description Similar to SBT2.6: Subtilisin-like protease SBT2.6

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g30020`	Subtilisin-like protease SBT2.6.	No verified direct reference in this release
`At2g19170`	Subtilisin-like protease SBT2.5.	No verified direct reference in this release
`At4g20430`	Subtilisin-like protease SBT2.2.	No verified direct reference in this release
`At5g44530`	Subtilisin-like protease SBT2.3.	No verified direct reference in this release
`At1g30600`	Subtilisin-like protease SBT2.1.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_002984 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006508 proteolysis Biological Process

GO:0005576 extracellular region Cellular Component

GO:0009506 plasmodesma Cellular Component

GO:0016020 membrane Cellular Component

GO:0004252 serine-type endopeptidase activity Molecular Function

GO:0008236 serine-type peptidase activity Molecular Function

KEGG gene cross-reference

ath:AT1G30600

ath:AT2G19170

ath:AT4G20430

ath:AT4G30020

ath:AT5G44530

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Extracellular0.672

Rank 1 · LXL04_002984 · OH-1004

Lysosome / Vacuole0.131

Rank 2 · LXL04_002984 · OH-1004

Cytoplasm0.085

Rank 3 · LXL04_002984 · OH-1004

Endoplasmic reticulum0.054

Rank 4 · LXL04_002984 · OH-1004

Cell membrane0.051

Rank 5 · LXL04_002984 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF05922.22Inhibitor_I972-134 aa

PF00082.28Peptidase_S8161-647 aa

PF06280.19fn3_5723-818 aa

PF17766.8fn3_6726-818 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_002984	`PF05922.22`	Inhibitor_I9	72	134	9.8e-13	49.3
LXL04_002984	`PF00082.28`	Peptidase_S8	161	647	3.3e-41	142.2
LXL04_002984	`PF06280.19`	fn3_5	723	818	8.9e-17	62.5
LXL04_002984	`PF17766.8`	fn3_6	726	818	1.3e-18	67.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9SZV5`	Arabidopsis thaliana	Subtilisin-like protease SBT2.6	75.709%	Swiss-Prot	strong database homology
`O64481`	Arabidopsis thaliana	Subtilisin-like protease SBT2.5	76.286%	Swiss-Prot	strong database homology
`Q9SUN6`	Arabidopsis thaliana	Subtilisin-like protease SBT2.2	47.931%	Swiss-Prot	moderate database homology
`Q9FI12`	Arabidopsis thaliana	Subtilisin-like protease SBT2.3	45.062%	Swiss-Prot	moderate database homology
`Q9SA75`	Arabidopsis thaliana	Subtilisin-like protease SBT2.1	44.691%	Swiss-Prot	moderate database homology

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