LXL04_002804 | RubberDandelionOmics

Gene overview

LXL04_002804

Reference: OH-1004 Chr: Chr01 Coordinates: 58609657-58611274 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1542 bp · LXL04_002804|LXL04_002804|OH1004|cDNA

ATGAAAACCGCCTATATAAAGGCACCAACTATTGTTTCAAAAAGAAATCAGGCTTCTGAAGTTTGCCGGTATATTTTCAATccaaaaagaaacaacaaaaTTCACAAAACTTATCGAGTGATTGATTCCGAGGAGAAGAGCGGCTGTCTAACGGTGGGAGGGTTAACAAACCCACCGGAGGCAGAAATTGCCACCGCAAACACGTTGAAGACGGGTGAAGGTGAACTTTCTACAATTCTACCCGTCACAAAGAGCGATCT...

CDS

Download CDS FASTA

1542 bp · LXL04_002804|LXL04_002804|OH1004|CDS

ATGAAAACCGCCTATATAAAGGCACCAACTATTGTTTCAAAAAGAAATCAGGCTTCTGAAGTTTGCCGGTATATTTTCAATCCAAAAAGAAACAACAAAATTCACAAAACTTATCGAGTGATTGATTCCGAGGAGAAGAGCGGCTGTCTAACGGTGGGAGGGTTAACAAACCCACCGGAGGCAGAAATTGCCACCGCAAACACGTTGAAGACGGGTGAAGGTGAACTTTCTACAATTCTACCCGTCACAAAGAGCGATCT...

Protein

Download Protein FASTA

513 aa · LXL04_002804|LXL04_002804|OH1004|PROTEIN

MKTAYIKAPTIVSKRNQASEVCRYIFNPKRNNKIHKTYRVIDSEEKSGCLTVGGLTNPPEAEIATANTLKTGEGELSTILPVTKSDLMITMGADGNNGALHGKYELGRQLGHGTFANVYHARNLQTGRSVAMKVVGKEKVIKAGMMDQIKREISVMKMVRHPNIVELHEVMASKSKIYFAMELVRGGELFSKIEKGRLKEDVARGYFQQLISAVDFCHSRGVYHRDLKPENLLLDEEGNLKVTDFGLSAFSDHLHQDGLL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_002804`
TK1151 ID	TkA01G419910
OH-1004 ID	LXL04_002804
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	96.500
Protein coverage (%)	TK1151 100.000 / OH-1004 82.456 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_002804

Location Chr01:58609657-58611274 (-)

Description Similar to CIPK6: CBL-interacting serine/threonine-protein kinase 6

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g30960`	CIPK serine-threonine protein kinases interact with CBL proteins.	Calcium-dependent modulation and plasma membrane targeting of the AKT2 potassium channel by the CBL4/CIPK6 calcium sensor/protein kinase complex.2011 · DOI: 10.1038/cr.2011.50
`At5g45820`	CIPK serine-threonine protein kinases interact with CBL proteins.	Constitutive activation and transgenic evaluation of the function of an arabidopsis PKS protein kinase.2002 · DOI: 10.1074/jbc.m205504200

Rice

Reference gene ID	Possible function	Papers / DOI
`Os01g0206700`	CIPK serine-threonine protein kinases interact with CBL proteins.	No verified direct reference in this release
`Os07g0678600`	CIPK serine-threonine protein kinases interact with CBL proteins.	No verified direct reference in this release
`Os08g0441100`	CIPK serine-threonine protein kinases interact with CBL proteins.	No verified direct reference in this release

Functional annotation source

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Functional annotation source: OH1004 · LXL04_002804 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0007165 signal transduction Biological Process

GO:0009414 response to water deprivation Biological Process

GO:0009651 response to salt stress Biological Process

GO:0009737 response to abscisic acid Biological Process

GO:0010540 basipetal auxin transport Biological Process

GO:0042538 hyperosmotic salinity response Biological Process

GO:0051592 response to calcium ion Biological Process

GO:0005634 nucleus Cellular Component

GO:0005783 endoplasmic reticulum Cellular Component

GO:0004674 protein serine/threonine kinase activity Molecular Function

GO:0005524 ATP binding Molecular Function

GO:0106310 protein serine kinase activity Molecular Function

KEGG gene cross-reference

ath:AT4G30960

ath:AT5G45820

dosa:Os01g0206700

dosa:Os07g0678600

dosa:Os08g0441100

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.451

Rank 1 · LXL04_002804 · OH-1004

Nucleus0.332

Rank 2 · LXL04_002804 · OH-1004

Cell membrane0.273

Rank 3 · LXL04_002804 · OH-1004

Endoplasmic reticulum0.065

Rank 4 · LXL04_002804 · OH-1004

Golgi apparatus0.063

Rank 5 · LXL04_002804 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00069.32Pkinase104-358 aa

PF07714.24PK_Tyr_Ser-Thr105-353 aa

PF03109.23ABC1146-261 aa

PF14531.13Kinase-like196-310 aa

PF03822.21NAF384-442 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_002804	`PF00069.32`	Pkinase	104	358	2e-75	254.3
LXL04_002804	`PF07714.24`	PK_Tyr_Ser-Thr	105	353	1.5e-35	123.5
LXL04_002804	`PF03109.23`	ABC1	146	261	1.3e-06	28.5
LXL04_002804	`PF14531.13`	Kinase-like	196	310	1.4e-06	28.5
LXL04_002804	`PF03822.21`	NAF	384	442	1.2e-22	80.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`O65554`	Arabidopsis thaliana	CBL-interacting serine/threonine-protein kinase 6	75.000%	Swiss-Prot	strong database homology
`Q9FJ54`	Arabidopsis thaliana	CBL-interacting serine/threonine-protein kinase 20	61.033%	Swiss-Prot	strong database homology
`Q9LWM4`	Oryza sativa subsp. japonica	CBL-interacting protein kinase 5	62.844%	Swiss-Prot	strong database homology
`Q7X996`	Oryza sativa subsp. japonica	CBL-interacting protein kinase 2	58.701%	Swiss-Prot	strong database homology
`Q6Z9F4`	Oryza sativa subsp. japonica	CBL-interacting protein kinase 6	63.033%	Swiss-Prot	strong database homology

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