LXL04_002544 | RubberDandelionOmics

Gene overview

LXL04_002544

Reference: OH-1004 Chr: Chr01 Coordinates: 51328672-51329433 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

762 bp · LXL04_002544|LXL04_002544|OH1004|cDNA

ATGGAGAACGGCTTCAAAGTTCGAATCACAAGAATGTTTCAATCGCCGTTCAACTCTTGCCGGACAAAACACATCTCCGACGTTGCTGATCAGCCCTTTTTCTTCCCGGAAAACCGCCATCACCGCCAACTCATCGACCTTTTCTCCCCTAAACCTCCACCACTTTCTAAACCCAAACACCATGTCGAAACTCACCTAAAACCACACTCTGATCCCCTTCCGCCGCCTTTGTTCTACGAAAAGAAATCTAAAAAcaccaa...

CDS

Download CDS FASTA

762 bp · LXL04_002544|LXL04_002544|OH1004|CDS

ATGGAGAACGGCTTCAAAGTTCGAATCACAAGAATGTTTCAATCGCCGTTCAACTCTTGCCGGACAAAACACATCTCCGACGTTGCTGATCAGCCCTTTTTCTTCCCGGAAAACCGCCATCACCGCCAACTCATCGACCTTTTCTCCCCTAAACCTCCACCACTTTCTAAACCCAAACACCATGTCGAAACTCACCTAAAACCACACTCTGATCCCCTTCCGCCGCCTTTGTTCTACGAAAAGAAATCTAAAAACACCAA...

Protein

Download Protein FASTA

253 aa · LXL04_002544|LXL04_002544|OH1004|PROTEIN

MENGFKVRITRMFQSPFNSCRTKHISDVADQPFFFPENRHHRQLIDLFSPKPPPLSKPKHHVETHLKPHSDPLPPPLFYEKKSKNTKKKKTHYRKITKSQDFSSVTDNHYYDCCSTDEEGESDGETTLFSSRSLSSESSVSFRKNGERRLAQKKHKKTYGGRGCNDRKATDVIPLKGKGKIIRDSVAVVKKSSDPHEDFRVSMLEMIVERQIFGAKDLENLLECFLSLNSQEHHRVIFEVFTEIWETLFSDWL

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_002544`
TK1151 ID	TkA01G470610
OH-1004 ID	LXL04_002544
Relationship / confidence	Rbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)	82.900
Protein coverage (%)	TK1151 86.184 / OH-1004 60.079 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_002544

Location Chr01:51328672-51329433 (-)

Description Similar to OFP8: Transcription repressor OFP8

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g19650`	Transcriptional repressor that regulates multiple aspects of plant growth and development through the regulation of BEL1-LIKE (BLH) and KNOX TALE (KNAT) homeodomain transcription factors.	Arabidopsis ovate family proteins, a novel transcriptional repressor family, control multiple aspects of plant growth and development.2011 · DOI: 10.1371/journal.pone.0023896
`At2g18500`	Transcriptional repressor that regulates multiple aspects of plant growth and development through the regulation of BEL1-LIKE (BLH) and KNOX TALE (KNAT) homeodomain transcription factors.	No verified direct reference in this release
`At3g52525`	Transcriptional repressor that regulates multiple aspects of plant growth and development through the regulation of BEL1-LIKE (BLH) and KNOX TALE (KNAT) homeodomain transcription factors.	No verified direct reference in this release
`At1g06920`	Transcriptional repressor that regulates multiple aspects of plant growth and development through the regulation of BEL1-LIKE (BLH) and KNOX TALE (KNAT) homeodomain transcription factors.	OVATE FAMILY PROTEIN4 (OFP4) interaction with KNAT7 regulates secondary cell wall formation in Arabidopsis thaliana.2011 · DOI: 10.1111/j.1365-313x.2011.04595.x Arabidopsis ovate family proteins, a novel transcriptional repressor family, control multiple aspects of plant growth and development.2011 · DOI: 10.1371/journal.pone.0023896
`At2g30400`	Transcriptional repressor that regulates multiple aspects of plant growth and development through the regulation of BEL1-LIKE (BLH) and KNOX TALE (KNAT) homeodomain transcription factors.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_002544 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006351 DNA-templated transcription Biological Process

GO:0045892 negative regulation of DNA-templated transcription Biological Process

GO:0071548 response to dexamethasone Biological Process

GO:2000652 regulation of secondary cell wall biogenesis Biological Process

GO:0005634 nucleus Cellular Component

GO:0003677 DNA binding Molecular Function

KEGG gene cross-reference

ath:AT1G06920

ath:AT2G18500

ath:AT2G30400

ath:AT3G52525

ath:AT5G19650

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.386

Rank 1 · LXL04_002544 · OH-1004

Nucleus0.382

Rank 2 · LXL04_002544 · OH-1004

Cell membrane0.351

Rank 3 · LXL04_002544 · OH-1004

Endoplasmic reticulum0.078

Rank 4 · LXL04_002544 · OH-1004

Plastid0.047

Rank 5 · LXL04_002544 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF04844.19Ovate192-249 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_002544	`PF04844.19`	Ovate	192	249	3e-25	88.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q3E9B4`	Arabidopsis thaliana	Transcription repressor OFP8	68.657%	Swiss-Prot	weak database homology
`Q9ZU65`	Arabidopsis thaliana	Transcription repressor OFP7	39.161%	Swiss-Prot	moderate database homology
`Q3EAL1`	Arabidopsis thaliana	Transcription repressor OFP6	59.677%	Swiss-Prot	weak database homology
`F4HNU8`	Arabidopsis thaliana	Transcription repressor OFP4	37.838%	Swiss-Prot	weak database homology
`O04351`	Arabidopsis thaliana	Transcription repressor OFP2	52.239%	Swiss-Prot	weak database homology

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