LXL04_001842 | RubberDandelionOmics

Gene overview

LXL04_001842

Reference: OH-1004 Chr: Chr01 Coordinates: 34867171-34869047 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1185 bp · LXL04_001842|LXL04_001842|OH1004|cDNA

ATGTATGGAACACAAAGCAAGAAGGATTTATCGCTCGAAATTCAATCACAAATACCCATCTTGAGACCAAGCATCCATTCTAGAAGGGCGAATATCACTGTAAAATTCCAAGATCTTTATGGGTTTACTGTTGAAGGCAATGTCGATGACGCAAACACAATAAATGACGTGAGAGAGAAAGTGAGGGAACAAGGTAAGGTTTGGTGGTCATTAGAAGCTAGCAAAGGGGCAAATTGGTATTTGCAAACCGACGTATCGTC...

CDS

Download CDS FASTA

1185 bp · LXL04_001842|LXL04_001842|OH1004|CDS

ATGTATGGAACACAAAGCAAGAAGGATTTATCGCTCGAAATTCAATCACAAATACCCATCTTGAGACCAAGCATCCATTCTAGAAGGGCGAATATCACTGTAAAATTCCAAGATCTTTATGGGTTTACTGTTGAAGGCAATGTCGATGACGCAAACACAATAAATGACGTGAGAGAGAAAGTGAGGGAACAAGGTAAGGTTTGGTGGTCATTAGAAGCTAGCAAAGGGGCAAATTGGTATTTGCAAACCGACGTATCGTC...

Protein

Download Protein FASTA

394 aa · LXL04_001842|LXL04_001842|OH1004|PROTEIN

MYGTQSKKDLSLEIQSQIPILRPSIHSRRANITVKFQDLYGFTVEGNVDDANTINDVREKVREQGKVWWSLEASKGANWYLQTDVSSALKASLKFSVLVNAITLKKLIRKGIPPVLRPKVWFSLSGAAKKKSTVPDSYYNDLIIAVEGKVTPATKQIDHDLPRTFPGHPWLDTPEGHASLRRVLVGYSFRDSDVGYCQGLNYVAALLLLVMKTEEDAFWMLAVLLENVLVNDCYSSNLSGCHVEQRVFKDLLKKKCPSIY...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_001842`
TK1151 ID	TkA01G504490
OH-1004 ID	LXL04_001842
Relationship / confidence	Rbh Sequence Supported / Probable
Protein identity (%)	100.000
Protein coverage (%)	TK1151 98.131 / OH-1004 79.949 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID	`LXL04_001842`
Location	Chr01:34867171-34869047 (-)
Description	Similar to TBC1D2: TBC1 domain family member 2A
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_001842` · GCA_047496595.1_OSU_TarKok_2.0.
GO annotations (OH1004 source)	GO:0043547 positive regulation of GTPase activity Biological Process GO:0005654 nucleoplasm Cellular Component GO:0005737 cytoplasm Cellular Component GO:0005829 cytosol Cellular Component GO:0005886 plasma membrane Cellular Component GO:0030054 cell junction Cellular Component GO:0031410 cytoplasmic vesicle Cellular Component GO:0070161 anchoring junction Cellular Component GO:0005096 GTPase activator activity Molecular Function GO:0045296 cadherin binding Molecular Function
KEGG gene cross-reference	bta:513828 dre:406635 hsa:55357 mmu:381605 rno:313234 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.603

Rank 1 · LXL04_001842 · OH-1004

Nucleus0.248

Rank 2 · LXL04_001842 · OH-1004

Cell membrane0.137

Rank 3 · LXL04_001842 · OH-1004

Golgi apparatus0.113

Rank 4 · LXL04_001842 · OH-1004

Lysosome / Vacuole0.083

Rank 5 · LXL04_001842 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00566.26RabGAP-TBC116-322 aa

PF23436.2RabGap-TBC_2179-342 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_001842	`PF00566.26`	RabGAP-TBC	116	322	5.5e-59	200.2
LXL04_001842	`PF23436.2`	RabGap-TBC_2	179	342	3e-32	112.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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