LXL04_001834 | RubberDandelionOmics

Gene overview

LXL04_001834

Reference: OH-1004 Chr: Chr01 Coordinates: 34766463-34767614 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

591 bp · LXL04_001834|LXL04_001834|OH1004|cDNA

ATGGAGGTGAGCTTGGAGGGTTCGAAAGCGATACTGGTAGCGTACACCAAGCAACACGTCCTCAAGTACCATCAATGGATGCAAGATCCTGCTCTTCTCCAAGCCACTGGCTCCGAGCCCTTGACCCTCGAAGAAGAGTACCAGATGCAGCTTTCATGGACGCAAGACCCCCTCAAACGAACTTTTATCATCTTGGATAAAGATTTGATTTCTGGAAAATTCATTCATGGCGATCCTCATGATGAAGCCATGATAGGTGA...

CDS

Download CDS FASTA

591 bp · LXL04_001834|LXL04_001834|OH1004|CDS

ATGGAGGTGAGCTTGGAGGGTTCGAAAGCGATACTGGTAGCGTACACCAAGCAACACGTCCTCAAGTACCATCAATGGATGCAAGATCCTGCTCTTCTCCAAGCCACTGGCTCCGAGCCCTTGACCCTCGAAGAAGAGTACCAGATGCAGCTTTCATGGACGCAAGACCCCCTCAAACGAACTTTTATCATCTTGGATAAAGATTTGATTTCTGGAAAATTCATTCATGGCGATCCTCATGATGAAGCCATGATAGGTGA...

Protein

Download Protein FASTA

196 aa · LXL04_001834|LXL04_001834|OH1004|PROTEIN

MEVSLEGSKAILVAYTKQHVLKYHQWMQDPALLQATGSEPLTLEEEYQMQLSWTQDPLKRTFIILDKDLISGKFIHGDPHDEAMIGDVNIYMNDLEDSNLAEIEIMIAEPKRSRGKGLGKESVLMMTVFAIENHKINTFRAKIGDSNEASLNMFRKLGFKEVSHSEIFKEVTLELPITAEKSKELIKLLGNMITHS

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_001834`
TK1151 ID	TkA01G505000
OH-1004 ID	LXL04_001834
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	99.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_001834

Location Chr01:34766463-34767614 (+)

Description Similar to nat9: N-acetyltransferase 9-like protein

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g04845`	Probable protein acetyltransferase with dual specificity triggering both N-alpha-acetylation (NTA) and epsilon-lysine acetylation (KA).	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_001834 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:1901673 regulation of mitotic spindle assembly Biological Process

GO:0005634 nucleus Cellular Component

GO:0005829 cytosol Cellular Component

GO:0032991 protein-containing complex Cellular Component

GO:0008080 N-acetyltransferase activity Molecular Function

GO:0061733 protein-lysine-acetyltransferase activity Molecular Function

GO:0120519 tubulin N-terminal-methionine acetyltransferase activity Molecular Function

KEGG gene cross-reference

ath:AT2G04845

cel:CELE_Y67D2.5

hsa:26151

mmu:66176

nve:5506891

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.698

Rank 1 · LXL04_001834 · OH-1004

Nucleus0.476

Rank 2 · LXL04_001834 · OH-1004

Mitochondrion0.075

Rank 3 · LXL04_001834 · OH-1004

Cell membrane0.049

Rank 4 · LXL04_001834 · OH-1004

Peroxisome0.045

Rank 5 · LXL04_001834 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13302.14Acetyltransf_311-160 aa

PF00583.32Acetyltransf_171-159 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_001834	`PF13302.14`	Acetyltransf_3	11	160	4.9e-16	60.4
LXL04_001834	`PF00583.32`	Acetyltransf_1	71	159	2.4e-06	28.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q8S8E7`	Arabidopsis thaliana	GCN5-related N-acetyltransferase 9	68.927%	Swiss-Prot	strong database homology

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