LXL04_001729 | RubberDandelionOmics

Gene overview

LXL04_001729

Reference: OH-1004 Chr: Chr01 Coordinates: 32079757-32088043 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1101 bp · LXL04_001729|LXL04_001729|OH1004|cDNA

ATGGTGTATGATTCTTCTCAAAGAACGCAGGCTGGAAAGATCGATGCTCATCTGCTACCCCACTCTCATGACGACGTTGGCTGGCTGAAGACCGTCGATCAGTACTACACCGGTGCTAATAACTCCATTCGGGTACCACCGACTccatttttttctttctttctgtGTGTGCACATGTGTACTGATCGCTGGGTGATTGATTTCTTTCTTTTTGCGGGAAATCGATTACAGGGTGATTTCAGCTTTGCTCGATGGCAAGA...

CDS

Download CDS FASTA

1101 bp · LXL04_001729|LXL04_001729|OH1004|CDS

ATGGTGTATGATTCTTCTCAAAGAACGCAGGCTGGAAAGATCGATGCTCATCTGCTACCCCACTCTCATGACGACGTTGGCTGGCTGAAGACCGTCGATCAGTACTACACCGGTGCTAATAACTCCATTCGGGTACCACCGACTCCATTTTTTTCTTTCTTTCTGTGTGTGCACATGTGTACTGATCGCTGGGTGATTGATTTCTTTCTTTTTGCGGGAAATCGATTACAGGGTGATTTCAGCTTTGCTCGATGGCAAGA...

Protein

Download Protein FASTA

366 aa · LXL04_001729|LXL04_001729|OH1004|PROTEIN

MVYDSSQRTQAGKIDAHLLPHSHDDVGWLKTVDQYYTGANNSIRVPPTPFFSFFLCVHMCTDRWVIDFFLFAGNRLQGDFSFARWQESQSSTSLRLPEIPPSSVKKFPASSLRLHLPVCFFGKAISSLRLPEIPPSSMKNDLLDFDIVIRSCVTPFSGLLNFETALQKRRLEGTALEGPIPNSYAALTQLDDLRIGDLGGEDSTLDFLVNFTSISIRYLGSNDLNGVILRNIVTPQLRALNAVGTFVNGDDLLDGTISHL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_001729`
TK1151 ID	TkA02G515420
OH-1004 ID	LXL04_001729
Relationship / confidence	Rbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)	57.000
Protein coverage (%)	TK1151 70.093 / OH-1004 25.410 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_001729

Location Chr01:32079757-32088043 (+)

Description Similar to At5g13980: Probable alpha-mannosidase At5g13980

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g13980`	Liberates mannose from p-nitrophenyl-alpha-D-mannoside in vitro.	No verified direct reference in this release
`At5g66150`	Liberates mannose from p-nitrophenyl-alpha-D-mannoside in vitro.	No verified direct reference in this release
`At3g26720`	Liberates mannose from p-nitrophenyl-alpha-D-mannoside in vitro.	No verified direct reference in this release
`At1g56140`	Probable LRR receptor-like serine/threonine-protein kinase At1g56140.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_001729 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006013 mannose metabolic process Biological Process

GO:0045088 regulation of innate immune response Biological Process

GO:0052542 defense response by callose deposition Biological Process

GO:0000325 plant-type vacuole Cellular Component

GO:0000326 protein storage vacuole Cellular Component

GO:0005576 extracellular region Cellular Component

GO:0005773 vacuole Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009505 plant-type cell wall Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0048046 apoplast Cellular Component

GO:0099503 secretory vesicle Cellular Component

KEGG gene cross-reference

ath:AT1G56140

ath:AT3G26720

ath:AT5G13980

ath:AT5G66150

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.333

Rank 1 · LXL04_001729 · OH-1004

Nucleus0.275

Rank 2 · LXL04_001729 · OH-1004

Extracellular0.173

Rank 3 · LXL04_001729 · OH-1004

Endoplasmic reticulum0.132

Rank 4 · LXL04_001729 · OH-1004

Cell membrane0.122

Rank 5 · LXL04_001729 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01074.29Glyco_hydro_38N14-43 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_001729	`PF01074.29`	Glyco_hydro_38N	14	43	3.7e-06	27.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q8LPJ3`	Arabidopsis thaliana	Probable alpha-mannosidase At5g13980	43.000%	Swiss-Prot	weak database homology
`Q9FKW9`	Arabidopsis thaliana	Probable alpha-mannosidase At5g66150	44.681%	Swiss-Prot	weak database homology
`P94078`	Arabidopsis thaliana	Alpha-mannosidase At3g26720	46.237%	Swiss-Prot	weak database homology
`C0LGH3`	Arabidopsis thaliana	Probable LRR receptor-like serine/threonine-protein kinase At1g56140	44.928%	Swiss-Prot	weak database homology

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