LXL04_001359 | RubberDandelionOmics

Gene overview

LXL04_001359

Reference: OH-1004 Chr: Chr01 Coordinates: 24875274-24878118 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1527 bp · LXL04_001359|LXL04_001359|OH1004|cDNA

ATGACACCTACGGCCGCAAAGCTTTTGGCAACACTTtcagttaaaaaaataaattgtcaCCTATATGCCAAGATCGATACTCCGGCAGCTGATGTTGTGGTGGAAGGTGGTGGAATCATAAACTATTTGACGGAAAAGGATTTCCCGGTGCTTGTTGAGATGGGTTTGAGTGCAAGATTTGTGAGGTTAGAAGGTAAGGCTATATTGACACCAAGCTATGTGGTGGACGGGTCGGTTCAGATGATTTATGTTGCTAAGGG...

CDS

Download CDS FASTA

1527 bp · LXL04_001359|LXL04_001359|OH1004|CDS

ATGACACCTACGGCCGCAAAGCTTTTGGCAACACTTTCAGTTAAAAAAATAAATTGTCACCTATATGCCAAGATCGATACTCCGGCAGCTGATGTTGTGGTGGAAGGTGGTGGAATCATAAACTATTTGACGGAAAAGGATTTCCCGGTGCTTGTTGAGATGGGTTTGAGTGCAAGATTTGTGAGGTTAGAAGGTAAGGCTATATTGACACCAAGCTATGTGGTGGACGGGTCGGTTCAGATGATTTATGTTGCTAAGGG...

Protein

Download Protein FASTA

508 aa · LXL04_001359|LXL04_001359|OH1004|PROTEIN

MTPTAAKLLATLSVKKINCHLYAKIDTPAADVVVEGGGIINYLTEKDFPVLVEMGLSARFVRLEGKAILTPSYVVDGSVQMIYVAKGSGGMRVVGKEGKLIFDGQVTEGDLIIIPPFYVVAVIADQSGMELFSLITSSKPVLEQLAGNMSVWKAMSPVVVQTVLNISPRLEERFRLKNSETRYFCNYKGWCTVYSRSPADHTMNTPYPTPITPSQTRIGWIGTGVMGAAMASRLLSAGYSLTIYARTPSKTLSLQSQGAR...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_001359`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_001359

Location Chr01:24875274-24878118 (-)

Description Similar to At1g71180: Probable 3-hydroxyisobutyrate dehydrogenase-like 3, mitochondrial

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g71180`	Probable 3-hydroxyisobutyrate dehydrogenase-like 3, mitochondrial.	No verified direct reference in this release
`At1g71170`	Probable 3-hydroxyisobutyrate dehydrogenase-like 2, mitochondrial.	No verified direct reference in this release
`At4g29120`	Probable 3-hydroxyisobutyrate dehydrogenase-like 1, mitochondrial.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_001359 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006574 L-valine catabolic process Biological Process

GO:0016054 organic acid catabolic process Biological Process

GO:0005634 nucleus Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0045121 membrane raft Cellular Component

GO:0008442 3-hydroxyisobutyrate dehydrogenase activity Molecular Function

GO:0016491 oxidoreductase activity Molecular Function

GO:0050661 NADP binding Molecular Function

GO:0051287 NAD binding Molecular Function

KEGG gene cross-reference

ath:AT1G71170

ath:AT1G71180

ath:AT4G29120

bsu:BSU13960

pcl:Pcal_0699

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.611

Rank 1 · LXL04_001359 · OH-1004

Peroxisome0.261

Rank 2 · LXL04_001359 · OH-1004

Nucleus0.224

Rank 3 · LXL04_001359 · OH-1004

Mitochondrion0.086

Rank 4 · LXL04_001359 · OH-1004

Plastid0.054

Rank 5 · LXL04_001359 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00190.29Cupin_126-168 aa

PF02826.262-Hacid_dh_C212-307 aa

PF03446.22NAD_binding_2217-373 aa

PF03807.24F420_oxidored217-309 aa

PF14833.12NAD_binding_11379-501 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_001359	`PF00190.29`	Cupin_1	26	168	1.3e-17	64.5
LXL04_001359	`PF02826.26`	2-Hacid_dh_C	212	307	1.9e-06	28.1
LXL04_001359	`PF03446.22`	NAD_binding_2	217	373	3.2e-45	154.8
LXL04_001359	`PF03807.24`	F420_oxidored	217	309	9.9e-09	36.4
LXL04_001359	`PF14833.12`	NAD_binding_11	379	501	3.4e-24	86.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q949M8`	Arabidopsis thaliana	Probable 3-hydroxyisobutyrate dehydrogenase-like 3, mitochondrial	58.689%	Swiss-Prot	moderate database homology
`Q9C991`	Arabidopsis thaliana	Probable 3-hydroxyisobutyrate dehydrogenase-like 2, mitochondrial	57.377%	Swiss-Prot	moderate database homology
`Q9SZE1`	Arabidopsis thaliana	Probable 3-hydroxyisobutyrate dehydrogenase-like 1, mitochondrial	51.447%	Swiss-Prot	moderate database homology

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