LXL04_001156 | RubberDandelionOmics

Gene overview

LXL04_001156

Reference: OH-1004 Chr: Chr01 Coordinates: 21195304-21197025 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1152 bp · LXL04_001156|LXL04_001156|OH1004|cDNA

ATGGTTTCTCTGCATAATAATGATACAACATATAGCCACATTCTTGCCGACAAGGCATGCCAAATCTATTTTGTTTTCCCCGGCGAAACATCCATGGGATATGGGTTTCGTGCATTTTTCTATTTCTTAGCACTTGCTTATTGTTTCATTGGACTATCGGCCATAACTGAAAGCTTCCCACAGATCTCTTTGGCTACTATCGATGCAATACGAAACATCGGCAAACTCTATGCTGGAGGTTTAGGGCCTGGAACACTTGT...

CDS

Download CDS FASTA

1152 bp · LXL04_001156|LXL04_001156|OH1004|CDS

ATGGTTTCTCTGCATAATAATGATACAACATATAGCCACATTCTTGCCGACAAGGCATGCCAAATCTATTTTGTTTTCCCCGGCGAAACATCCATGGGATATGGGTTTCGTGCATTTTTCTATTTCTTAGCACTTGCTTATTGTTTCATTGGACTATCGGCCATAACTGAAAGCTTCCCACAGATCTCTTTGGCTACTATCGATGCAATACGAAACATCGGCAAACTCTATGCTGGAGGTTTAGGGCCTGGAACACTTGT...

Protein

Download Protein FASTA

383 aa · LXL04_001156|LXL04_001156|OH1004|PROTEIN

MVSLHNNDTTYSHILADKACQIYFVFPGETSMGYGFRAFFYFLALAYCFIGLSAITESFPQISLATIDAIRNIGKLYAGGLGPGTLVGSAAFDLFPIHAVCVVVPKAGEVKKISDLGVWIVELFWSFWAYIWLYIILEVWSPNVIAVWEALFTVMQFGLLLVHAYAQDKRWPFSLMFTGRELKDQRNGYHQKRGLLIYFSIHQENELDSNYQHLPQNDPSDEHFMSPESDVVSVWKQQFVDALTLDSRKLRLSNKRWAWG...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_001156`
TK1151 ID	TkA01G557490
OH-1004 ID	LXL04_001156
Relationship / confidence	Rbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)	88.200
Protein coverage (%)	TK1151 93.311 / OH-1004 68.668 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_001156

Location Chr01:21195304-21197025 (+)

Description Similar to MHX: Magnesium/proton exchanger

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g47600`	Vacuolar transporter that exchanges protons with Mg(2+), Zn(2+) and Fe(2+) ions.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os02g0644900`	Vacuolar transporter that exchanges protons with Mg(2+), Zn(2+) and Fe(2+) ions.	No verified direct reference in this release
`Os11g0660000`	Vacuolar transporter that exchanges protons with Mg(2+), Zn(2+) and Fe(2+) ions.	No verified direct reference in this release

Functional annotation source

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Functional annotation source: OH1004 · LXL04_001156 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0002931 response to ischemia Biological Process

GO:0006829 zinc ion transport Biological Process

GO:0006874 intracellular calcium ion homeostasis Biological Process

GO:0007154 cell communication Biological Process

GO:0010468 regulation of gene expression Biological Process

GO:0015693 magnesium ion transport Biological Process

GO:0030001 metal ion transport Biological Process

GO:0035725 sodium ion transmembrane transport Biological Process

GO:0050808 synapse organization Biological Process

GO:0051480 regulation of cytosolic calcium ion concentration Biological Process

GO:0055085 transmembrane transport Biological Process

GO:0070050 neuron cellular homeostasis Biological Process

KEGG gene cross-reference

ath:AT2G47600

dosa:Os02g0644900

dosa:Os11g0660000

hsa:6543

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Lysosome / Vacuole0.441

Rank 1 · LXL04_001156 · OH-1004

Cytoplasm0.189

Rank 2 · LXL04_001156 · OH-1004

Cell membrane0.184

Rank 3 · LXL04_001156 · OH-1004

Endoplasmic reticulum0.183

Rank 4 · LXL04_001156 · OH-1004

Golgi apparatus0.168

Rank 5 · LXL04_001156 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01699.30Na_Ca_ex52-165 aa

PF01699.30Na_Ca_ex287-377 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_001156	`PF01699.30`	Na_Ca_ex	52	165	1.3e-29	103.8
LXL04_001156	`PF01699.30`	Na_Ca_ex	287	377	1.3e-29	103.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`O22252`	Arabidopsis thaliana	Magnesium/proton exchanger	55.778%	Swiss-Prot	strong database homology
`Q6H641`	Oryza sativa subsp. japonica	Magnesium/proton exchanger 2	54.955%	Swiss-Prot	strong database homology
`Q2R041`	Oryza sativa subsp. japonica	Magnesium/proton exchanger 1	55.378%	Swiss-Prot	strong database homology

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