LXL04_000777 | RubberDandelionOmics

Gene overview

LXL04_000777

Reference: OH-1004 Chr: Chr01 Coordinates: 14274603-14275127 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

525 bp · LXL04_000777|LXL04_000777|OH1004|cDNA

ATGTCGTCGGCTTCTCAACAACCCACATCCATAAACCCTATCCATCTCAAGAACCAGTTCGCTCTTCGATTTGTTCGAGCTCTAAACACCATAAAGAACCAAAAAGGATCTGCTCATGATACCCAGATGCATTGCAGATCTCGTCGAGTCAAAATTGCGGCGTACACAGCTATGGCGTCTGTTGTTGGATCAAGAAGATCATGGAGCCGAGCGGTTTTATGGAAGATCAGAAATCGATCGAGGAACCAGGATTTATTGCG...

CDS

Download CDS FASTA

525 bp · LXL04_000777|LXL04_000777|OH1004|CDS

ATGTCGTCGGCTTCTCAACAACCCACATCCATAAACCCTATCCATCTCAAGAACCAGTTCGCTCTTCGATTTGTTCGAGCTCTAAACACCATAAAGAACCAAAAAGGATCTGCTCATGATACCCAGATGCATTGCAGATCTCGTCGAGTCAAAATTGCGGCGTACACAGCTATGGCGTCTGTTGTTGGATCAAGAAGATCATGGAGCCGAGCGGTTTTATGGAAGATCAGAAATCGATCGAGGAACCAGGATTTATTGCG...

Protein

Download Protein FASTA

174 aa · LXL04_000777|LXL04_000777|OH1004|PROTEIN

MSSASQQPTSINPIHLKNQFALRFVRALNTIKNQKGSAHDTQMHCRSRRVKIAAYTAMASVVGSRRSWSRAVLWKIRNRSRNQDLLRNKIMTNHHRRRRHAKLCMKRRNRNSIREDVYLNPFRYSVQESKLRKMVPGGRNMDSWCLGDEIADYIKCLAAQVEVMQTLVDLYTVT

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_000777`
TK1151 ID	TkA08G028750
OH-1004 ID	LXL04_000777
Relationship / confidence	Rbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)	26.700
Protein coverage (%)	TK1151 71.369 / OH-1004 88.506 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_000777

Location Chr01:14274603-14275127 (-)

Description Similar to IBH1: Transcription factor IBH1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g43060`	Atypical and probable non DNA-binding bHLH transcription factor that acts as a transcriptional repressor that negatively regulates cell and organ elongation in response to gibberellin (GA) and brassinosteroid (BR) signaling.	Antagonistic HLH/bHLH transcription factors mediate brassinosteroid regulation of cell elongation and plant development in rice and Arabidopsis.2009 · DOI: 10.1105/tpc.109.070441 A triantagonistic basic helix-loop-helix system regulates cell elongation in Arabidopsis.2012 · DOI: 10.1105/tpc.112.105023 A triple helix-loop-helix/basic helix-loop-helix cascade controls cell elongation downstream of multiple hormonal and environmental signaling pathways in Arabidopsis.2012 · DOI: 10.1105/tpc.112.105163 Helix-loop-helix/basic helix-loop-helix transcription factor network represses cell elongation in Arabidopsis through an apparent incoherent feed-forward loop.2014 · DOI: 10.1073/pnas.1400203111

Rice

Reference gene ID	Possible function	Papers / DOI
`Os04g0660100`	Atypical and probable non DNA-binding bHLH transcription factor that acts as a negative regulator of cell elongation and plant development.	Antagonistic HLH/bHLH transcription factors mediate brassinosteroid regulation of cell elongation and plant development in rice and Arabidopsis.2009 · DOI: 10.1105/tpc.109.070441
`UniProt: Q01I07`	Atypical and probable non DNA-binding bHLH transcription factor that acts as a negative regulator of cell elongation and plant development.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_000777 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006351 DNA-templated transcription Biological Process

GO:0006355 regulation of DNA-templated transcription Biological Process

GO:0009740 gibberellic acid mediated signaling pathway Biological Process

GO:0009741 response to brassinosteroid Biological Process

GO:0009742 brassinosteroid mediated signaling pathway Biological Process

GO:0009826 unidimensional cell growth Biological Process

GO:0005634 nucleus Cellular Component

GO:0000976 transcription cis-regulatory region binding Molecular Function

GO:0003700 DNA-binding transcription factor activity Molecular Function

GO:0046983 protein dimerization activity Molecular Function

KEGG gene cross-reference

ath:AT2G43060

dosa:Os04g0660100

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.935

Rank 1 · LXL04_000777 · OH-1004

Cytoplasm0.090

Rank 2 · LXL04_000777 · OH-1004

Cell membrane0.035

Rank 3 · LXL04_000777 · OH-1004

Endoplasmic reticulum0.022

Rank 4 · LXL04_000777 · OH-1004

Plastid0.020

Rank 5 · LXL04_000777 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF26576.1IBH1_N16-79 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_000777	`PF26576.1`	IBH1_N	16	79	9.3e-12	45.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9SKX1`	Arabidopsis thaliana	Transcription factor IBH1	39.744%	Swiss-Prot	moderate database homology
`Q7XR02`	Oryza sativa subsp. japonica	Transcription factor IBH1	30.120%	Swiss-Prot	moderate database homology
`Q01I07`	Oryza sativa subsp. indica	Transcription factor IBH1	30.120%	Swiss-Prot	moderate database homology

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