Orthology / Synteny Evidence
Inspect cross-reference orthology and synteny-block evidence.
Evidence boundary: TK1151 and OH-1004 are different materials of the same species. This page shows ortholog and synteny ID correspondence between two reference genomes, not a same-cultivar genome-version upgrade. Blocks are based on DIAMOND RBH plus coordinate-order anchors and can be further refined by MCScanX/JCVI. JCVI_TKOH_ block IDs are also accepted.
Global Block Summary
Synteny blocks
427
ID converter records
84884
High confidence
302
Medium confidence
125
| Material | Assembly | Genes | Gap runs | Telomere scan |
|---|---|---|---|---|
| TK1151 | TK1151_GWHBCHF00000000 |
45224 | 1917 | 0/9 |
| OH-1004 | OH1004_GCA_047496595.1 |
40057 | 131 | 0/711 |
Query Interpretation
Input ID
JCVI_TKOH_00236
Query type
Block ID
Crosswalk plus synteny evidence
Resolved gene
None
No rubber dandelion gene was resolved
Linked evidence
0 / 1 / 16
crosswalk / blocks / anchors
Best block:
JCVI_TKOH_00236The query resolves to a synteny-block ID. Block span and anchor genes are shown first.
Linear Synteny View
The best synteny block for the current query is shown as a linear ribbon.
High
Medium
Other
Only the first 12 anchors are drawn
The anchor table is paginated; TSV contains all anchors for the current query. The ribbon shows only a partial linear backbone of the current block.
Current Query Evidence
No ID correspondence record is available for the current query.
Synteny Evidence
| Block | Query location | Target location | Orientation | Current mapped anchors | Confidence | Note |
|---|---|---|---|---|---|---|
JCVI_TKOH_00236 |
Chr05:40331869-44157106 | Chr04:62188760-66050144 | mixed | 16 | High | Formal JCVI synteny block from rebuilt ID map pipeline. |
Block Anchor Genes
Total anchors: 16 · Showing 1–16 · Page 1/1
| TK1151 gene | OH-1004 gene | Block | Identity | Coverage | Confidence |
|---|---|---|---|---|---|
TkA05G155900 | LXL04_020267 | JCVI_TKOH_00236 | 97.3 | 99.281 / 55.87 | Review |
TkA05G159500 | LXL04_020272 | JCVI_TKOH_00236 | 100.0 | 77.326 / 33.586 | Review |
TkA05G159510 | LXL04_020273 | JCVI_TKOH_00236 | 97.2 | 100.0 / 100.0 | Strict |
TkA05G159850 | LXL04_020278 | JCVI_TKOH_00236 | 100.0 | 100.0 / 100.0 | Complex |
TkA05G162320 | LXL04_020278 | JCVI_TKOH_00236 | 100.0 | 100.0 / 100.0 | Complex |
TkA05G162570 | LXL04_020298 | JCVI_TKOH_00236 | 100.0 | 99.225 / 20.645 | Review |
TkA05G163600 | LXL04_020300 | JCVI_TKOH_00236 | 99.4 | 78.845 / 96.78 | Probable |
TkA05G163610 | LXL04_020303 | JCVI_TKOH_00236 | 55.0 | 53.028 / 85.736 | Review |
TkA05G164390 | LXL04_020308 | JCVI_TKOH_00236 | 92.3 | 99.498 / 55.138 | Review |
TkA05G164460 | LXL04_020309 | JCVI_TKOH_00236 | 81.5 | 100.0 / 100.0 | Review |
TkA05G167780 | LXL04_020317 | JCVI_TKOH_00236 | 96.1 | 100.0 / 100.0 | Strict |
TkA05G168250 | LXL04_020318 | JCVI_TKOH_00236 | 99.6 | 100.0 / 100.0 | Review |
TkA05G168300 | LXL04_020321 | JCVI_TKOH_00236 | 98.9 | 100.0 / 100.0 | Review |
TkA05G169310 | LXL04_020318 | JCVI_TKOH_00236 | 98.8 | 100.0 / 100.0 | Review |
TkA05G169380 | LXL04_020321 | JCVI_TKOH_00236 | 98.9 | 100.0 / 100.0 | Review |
TkA05G172260 | LXL04_020323 | JCVI_TKOH_00236 | 96.0 | 95.42 / 59.809 | Review |