Orthology / Synteny Evidence
Inspect cross-reference orthology and synteny-block evidence.
Evidence boundary: TK1151 and OH-1004 are different materials of the same species. This page shows ortholog and synteny ID correspondence between two reference genomes, not a same-cultivar genome-version upgrade. Blocks are based on DIAMOND RBH plus coordinate-order anchors and can be further refined by MCScanX/JCVI. JCVI_TKOH_ block IDs are also accepted.
Global Block Summary
Synteny blocks
427
ID converter records
84884
High confidence
302
Medium confidence
125
| Material | Assembly | Genes | Gap runs | Telomere scan |
|---|---|---|---|---|
| TK1151 | TK1151_GWHBCHF00000000 |
45224 | 1917 | 0/9 |
| OH-1004 | OH1004_GCA_047496595.1 |
40057 | 131 | 0/711 |
Query Interpretation
Input ID
JCVI_TKOH_00013
Query type
Block ID
Crosswalk plus synteny evidence
Resolved gene
None
No rubber dandelion gene was resolved
Linked evidence
0 / 1 / 11
crosswalk / blocks / anchors
Best block:
JCVI_TKOH_00013The query resolves to a synteny-block ID. Block span and anchor genes are shown first.
Linear Synteny View
The best synteny block for the current query is shown as a linear ribbon.
High
Medium
Other
Only the first 12 anchors are drawn
The anchor table is paginated; TSV contains all anchors for the current query. The ribbon shows only a partial linear backbone of the current block.
Current Query Evidence
No ID correspondence record is available for the current query.
Synteny Evidence
| Block | Query location | Target location | Orientation | Current mapped anchors | Confidence | Note |
|---|---|---|---|---|---|---|
JCVI_TKOH_00013 |
Chr01:57040558-60414460 | Chr01:113989563-118381404 | mixed | 11 | High | Formal JCVI synteny block from rebuilt ID map pipeline. |
Block Anchor Genes
Total anchors: 11 · Showing 1–11 · Page 1/1
| TK1151 gene | OH-1004 gene | Block | Identity | Coverage | Confidence |
|---|---|---|---|---|---|
TkA01G224350 | LXL04_003959 | JCVI_TKOH_00013 | 62.1 | 100.0 / 100.0 | Complex |
TkA01G225500 | LXL04_003963 | JCVI_TKOH_00013 | 100.0 | 100.0 / 100.0 | Strict |
TkA01G225900 | LXL04_003944 | JCVI_TKOH_00013 | 100.0 | 100.0 / 88.136 | Strict |
TkA01G226280 | LXL04_003943 | JCVI_TKOH_00013 | 100.0 | 100.0 / 100.0 | Strict |
TkA01G227170 | LXL04_003936 | JCVI_TKOH_00013 | 100.0 | 90.391 / 84.95 | Strict |
TkA01G233570 | LXL04_003912 | JCVI_TKOH_00013 | 97.5 | 93.077 / 32.44 | Review |
TkA01G235280 | LXL04_003916 | JCVI_TKOH_00013 | 96.9 | 92.308 / 83.063 | Complex |
TkA01G235300 | LXL04_003917 | JCVI_TKOH_00013 | 74.9 | 100.0 / 98.953 | Complex |
TkA01G235310 | LXL04_003918 | JCVI_TKOH_00013 | 94.1 | 100.0 / 67.937 | Complex |
TkA01G238440 | LXL04_003910 | JCVI_TKOH_00013 | 97.6 | 100.0 / 53.39 | Review |
TkA01G238790 | LXL04_003908 | JCVI_TKOH_00013 | 99.6 | 92.089 / 77.355 | Probable |