Orthology / Synteny Evidence

Inspect cross-reference orthology and synteny-block evidence.

TkA01G624900 LXL04_000258 JCVI_TKOH_00001 Gene ID Converter

Evidence boundary: TK1151 and OH-1004 are different materials of the same species. This page shows ortholog and synteny ID correspondence between two reference genomes, not a same-cultivar genome-version upgrade. Blocks are based on DIAMOND RBH plus coordinate-order anchors and can be further refined by MCScanX/JCVI. JCVI_TKOH_ block IDs are also accepted.

Global Block Summary

Synteny blocks

427

ID converter records

84884

High confidence

302

Medium confidence

125

Material	Assembly	Genes	Gap runs	Telomere scan
TK1151	`TK1151_GWHBCHF00000000`	45224	1917	0/9
OH-1004	`OH1004_GCA_047496595.1`	40057	131	0/711

Query Interpretation

Input ID

JCVI_TKOH_00205

Query type

Block ID

Crosswalk plus synteny evidence

Resolved gene

None

No rubber dandelion gene was resolved

Linked evidence

0 / 1 / 53

crosswalk / blocks / anchors

Best block: JCVI_TKOH_00205

The query resolves to a synteny-block ID. Block span and anchor genes are shown first.

Gene ID Converter Download current result

Linear Synteny View

The best synteny block for the current query is shown as a linear ribbon.

JCVI_TKOH_00205 Chr04 113720042-115587767 Chr09 46720997-48942450 mixed High 53 anchors

High Medium Other Only the first 12 anchors are drawn

The anchor table is paginated; TSV contains all anchors for the current query. The ribbon shows only a partial linear backbone of the current block.

Current Query Evidence

No ID correspondence record is available for the current query.

Synteny Evidence

Block	Query location	Target location	Orientation	Current mapped anchors	Confidence	Note
`JCVI_TKOH_00205`	Chr04:113720042-115587767	Chr09:46720997-48942450	mixed	53	High	Formal JCVI synteny block from rebuilt ID map pipeline.

Block Anchor Genes

Total anchors: 53 · Showing 1–53 · Page 1/1

Download All Anchors TSV

TkA04G451490 → LXL04_038628

98.1%

TkA04G451970 → LXL04_038632

99.8%

TkA04G452040 → LXL04_038633

98.8%

TkA04G452080 → LXL04_038634

76.7%

TkA04G452240 → LXL04_038636

99.3%

TkA04G452370 → LXL04_038637

99.0%

TkA04G452420 → LXL04_038639

100.0%

TkA04G452570 → LXL04_038642

98.5%

TkA04G452590 → LXL04_038643

99.2%

TkA04G452630 → LXL04_038644

100.0%

TkA04G453030 → LXL04_038648

100.0%

TkA04G453040 → LXL04_038649

78.2%

TK1151 gene	OH-1004 gene	Block	Identity	Coverage	Confidence
`TkA04G451490`	`LXL04_038628`	`JCVI_TKOH_00205`	98.1	100.0 / 100.0	Complex
`TkA04G451970`	`LXL04_038632`	`JCVI_TKOH_00205`	99.8	100.0 / 100.0	Strict
`TkA04G452040`	`LXL04_038633`	`JCVI_TKOH_00205`	98.8	100.0 / 63.158	Review
`TkA04G452080`	`LXL04_038634`	`JCVI_TKOH_00205`	76.7	44.397 / 93.064	Review
`TkA04G452240`	`LXL04_038636`	`JCVI_TKOH_00205`	99.3	97.857 / 78.137	Probable
`TkA04G452370`	`LXL04_038637`	`JCVI_TKOH_00205`	99.0	100.0 / 99.398	Complex
`TkA04G452420`	`LXL04_038639`	`JCVI_TKOH_00205`	100.0	100.0 / 100.0	Strict
`TkA04G452570`	`LXL04_038642`	`JCVI_TKOH_00205`	98.5	100.0 / 30.979	Review
`TkA04G452590`	`LXL04_038643`	`JCVI_TKOH_00205`	99.2	100.0 / 100.0	Strict
`TkA04G452630`	`LXL04_038644`	`JCVI_TKOH_00205`	100.0	100.0 / 100.0	Strict
`TkA04G453030`	`LXL04_038648`	`JCVI_TKOH_00205`	100.0	100.0 / 100.0	Strict
`TkA04G453040`	`LXL04_038649`	`JCVI_TKOH_00205`	78.2	100.0 / 100.0	Review
`TkA04G453190`	`LXL04_038650`	`JCVI_TKOH_00205`	98.7	99.359 / 80.729	Complex
`TkA04G453400`	`LXL04_038652`	`JCVI_TKOH_00205`	99.4	100.0 / 21.166	Review
`TkA04G453450`	`LXL04_038661`	`JCVI_TKOH_00205`	78.2	100.0 / 31.7	Complex
`TkA04G453560`	`LXL04_038650`	`JCVI_TKOH_00205`	96.4	98.81 / 86.458	Review
`TkA04G453570`	`LXL04_038661`	`JCVI_TKOH_00205`	81.8	93.191 / 37.176	Complex
`TkA04G453840`	`LXL04_038661`	`JCVI_TKOH_00205`	100.0	100.0 / 16.138	Review
`TkA04G453850`	`LXL04_038661`	`JCVI_TKOH_00205`	94.2	98.496 / 100.0	Probable
`TkA04G453990`	`LXL04_038663`	`JCVI_TKOH_00205`	100.0	100.0 / 97.093	Strict
`TkA04G454050`	`LXL04_038664`	`JCVI_TKOH_00205`	99.5	96.087 / 87.008	Complex
`TkA04G454350`	`LXL04_038670`	`JCVI_TKOH_00205`	100.0	95.578 / 65.962	Complex
`TkA04G454370`	`LXL04_038672`	`JCVI_TKOH_00205`	100.0	100.0 / 100.0	Strict
`TkA04G454420`	`LXL04_038673`	`JCVI_TKOH_00205`	98.9	100.0 / 81.157	Strict
`TkA04G454730`	`LXL04_038677`	`JCVI_TKOH_00205`	96.2	100.0 / 100.0	Strict
`TkA04G454830`	`LXL04_038678`	`JCVI_TKOH_00205`	100.0	100.0 / 100.0	Strict
`TkA04G454850`	`LXL04_038679`	`JCVI_TKOH_00205`	65.5	98.75 / 83.798	Review
`TkA04G454940`	`LXL04_038680`	`JCVI_TKOH_00205`	87.5	98.773 / 65.248	Review
`TkA04G455030`	`LXL04_038683`	`JCVI_TKOH_00205`	89.0	100.0 / 100.0	Complex
`TkA04G455540`	`LXL04_038685`	`JCVI_TKOH_00205`	100.0	100.0 / 53.689	Review
`TkA04G455550`	`LXL04_038686`	`JCVI_TKOH_00205`	98.8	100.0 / 100.0	Strict
`TkA04G455570`	`LXL04_038688`	`JCVI_TKOH_00205`	92.0	100.0 / 100.0	Complex
`TkA04G455700`	`LXL04_038727`	`JCVI_TKOH_00205`	100.0	100.0 / 100.0	Strict
`TkA04G455740`	`LXL04_038726`	`JCVI_TKOH_00205`	99.1	100.0 / 100.0	Review
`TkA04G455840`	`LXL04_038725`	`JCVI_TKOH_00205`	99.7	100.0 / 100.0	Complex
`TkA04G455950`	`LXL04_038722`	`JCVI_TKOH_00205`	95.9	93.989 / 26.108	Review
`TkA04G456060`	`LXL04_038714`	`JCVI_TKOH_00205`	61.6	96.69 / 94.159	Complex
`TkA04G456070`	`LXL04_038720`	`JCVI_TKOH_00205`	98.1	100.0 / 100.0	Strict
`TkA04G456100`	`LXL04_038717`	`JCVI_TKOH_00205`	99.0	100.0 / 100.0	Strict
`TkA04G456110`	`LXL04_038716`	`JCVI_TKOH_00205`	95.9	91.288 / 90.637	Strict
`TkA04G456120`	`LXL04_038715`	`JCVI_TKOH_00205`	98.4	100.0 / 100.0	Review
`TkA04G456600`	`LXL04_038714`	`JCVI_TKOH_00205`	99.5	100.0 / 100.0	Complex
`TkA04G456610`	`LXL04_038712`	`JCVI_TKOH_00205`	100.0	77.632 / 100.0	Complex
`TkA04G456630`	`LXL04_038711`	`JCVI_TKOH_00205`	90.2	100.0 / 100.0	Complex
`TkA04G456810`	`LXL04_038710`	`JCVI_TKOH_00205`	91.8	80.882 / 100.0	Complex
`TkA04G456840`	`LXL04_038709`	`JCVI_TKOH_00205`	97.0	100.0 / 87.713	Complex
`TkA04G457740`	`LXL04_038706`	`JCVI_TKOH_00205`	98.4	100.0 / 100.0	Strict
`TkA04G457760`	`LXL04_038705`	`JCVI_TKOH_00205`	98.2	100.0 / 100.0	Complex
`TkA04G458110`	`LXL04_038709`	`JCVI_TKOH_00205`	99.5	100.0 / 87.713	Complex
`TkA04G458150`	`LXL04_038710`	`JCVI_TKOH_00205`	90.9	83.333 / 100.0	Complex
`TkA04G458210`	`LXL04_038711`	`JCVI_TKOH_00205`	90.7	100.0 / 100.0	Complex
`TkA04G458260`	`LXL04_038712`	`JCVI_TKOH_00205`	94.5	77.181 / 100.0	Complex
`TkA04G458280`	`LXL04_038714`	`JCVI_TKOH_00205`	100.0	100.0 / 65.654	Complex