Orthology / Synteny Evidence

Inspect cross-reference orthology and synteny-block evidence.

TkA01G624900 LXL04_000258 JCVI_TKOH_00001 Gene ID Converter

Evidence boundary: TK1151 and OH-1004 are different materials of the same species. This page shows ortholog and synteny ID correspondence between two reference genomes, not a same-cultivar genome-version upgrade. Blocks are based on DIAMOND RBH plus coordinate-order anchors and can be further refined by MCScanX/JCVI. JCVI_TKOH_ block IDs are also accepted.

Global Block Summary

Synteny blocks

427

ID converter records

84884

High confidence

302

Medium confidence

125

Material	Assembly	Genes	Gap runs	Telomere scan
TK1151	`TK1151_GWHBCHF00000000`	45224	1917	0/9
OH-1004	`OH1004_GCA_047496595.1`	40057	131	0/711

Query Interpretation

Input ID

JCVI_TKOH_00199

Query type

Block ID

Crosswalk plus synteny evidence

Resolved gene

None

No rubber dandelion gene was resolved

Linked evidence

0 / 1 / 86

crosswalk / blocks / anchors

Best block: JCVI_TKOH_00199

The query resolves to a synteny-block ID. Block span and anchor genes are shown first.

Gene ID Converter Download current result

Linear Synteny View

The best synteny block for the current query is shown as a linear ribbon.

JCVI_TKOH_00199 Chr04 83896506-89879220 Chr09 17545788-22502919 mixed High 86 anchors

High Medium Other Only the first 12 anchors are drawn

The anchor table is paginated; TSV contains all anchors for the current query. The ribbon shows only a partial linear backbone of the current block.

Current Query Evidence

No ID correspondence record is available for the current query.

Synteny Evidence

Block	Query location	Target location	Orientation	Current mapped anchors	Confidence	Note
`JCVI_TKOH_00199`	Chr04:83896506-89879220	Chr09:17545788-22502919	mixed	86	High	Formal JCVI synteny block from rebuilt ID map pipeline.

Block Anchor Genes

Total anchors: 86 · Showing 1–86 · Page 1/1

Download All Anchors TSV

TkA04G333840 → LXL04_037687

80.8%

TkA04G333930 → LXL04_037686

100.0%

TkA04G333940 → LXL04_037685

84.2%

TkA04G333960 → LXL04_037684

99.8%

TkA04G333970 → LXL04_037683

100.0%

TkA04G334730 → LXL04_037677

100.0%

TkA04G335720 → LXL04_037675

93.5%

TkA04G336010 → LXL04_037674

100.0%

TkA04G336320 → LXL04_037694

100.0%

TkA04G336330 → LXL04_037696

73.6%

TkA04G336970 → LXL04_037704

99.7%

TkA04G337570 → LXL04_037710

99.8%

TK1151 gene	OH-1004 gene	Block	Identity	Coverage	Confidence
`TkA04G333840`	`LXL04_037687`	`JCVI_TKOH_00199`	80.8	100.0 / 100.0	Complex
`TkA04G333930`	`LXL04_037686`	`JCVI_TKOH_00199`	100.0	100.0 / 100.0	Complex
`TkA04G333940`	`LXL04_037685`	`JCVI_TKOH_00199`	84.2	100.0 / 100.0	Complex
`TkA04G333960`	`LXL04_037684`	`JCVI_TKOH_00199`	99.8	100.0 / 100.0	Complex
`TkA04G333970`	`LXL04_037683`	`JCVI_TKOH_00199`	100.0	73.936 / 42.378	Complex
`TkA04G334730`	`LXL04_037677`	`JCVI_TKOH_00199`	100.0	100.0 / 32.523	Review
`TkA04G335720`	`LXL04_037675`	`JCVI_TKOH_00199`	93.5	100.0 / 74.349	Probable
`TkA04G336010`	`LXL04_037674`	`JCVI_TKOH_00199`	100.0	100.0 / 68.125	Review
`TkA04G336320`	`LXL04_037694`	`JCVI_TKOH_00199`	100.0	100.0 / 100.0	Review
`TkA04G336330`	`LXL04_037696`	`JCVI_TKOH_00199`	73.6	94.737 / 74.504	Review
`TkA04G336970`	`LXL04_037704`	`JCVI_TKOH_00199`	99.7	100.0 / 100.0	Review
`TkA04G337570`	`LXL04_037710`	`JCVI_TKOH_00199`	99.8	100.0 / 100.0	Review
`TkA04G337670`	`LXL04_037712`	`JCVI_TKOH_00199`	100.0	100.0 / 100.0	Review
`TkA04G337700`	`LXL04_037713`	`JCVI_TKOH_00199`	98.7	100.0 / 100.0	Review
`TkA04G338850`	`LXL04_037714`	`JCVI_TKOH_00199`	100.0	38.621 / 60.215	Review
`TkA04G338920`	`LXL04_037716`	`JCVI_TKOH_00199`	96.5	100.0 / 100.0	Review
`TkA04G339320`	`LXL04_037719`	`JCVI_TKOH_00199`	98.3	89.447 / 66.855	Complex
`TkA04G339730`	`LXL04_037723`	`JCVI_TKOH_00199`	95.0	97.304 / 100.0	Complex
`TkA04G339820`	`LXL04_037729`	`JCVI_TKOH_00199`	86.8	79.688 / 81.522	Complex
`TkA04G339870`	`LXL04_037731`	`JCVI_TKOH_00199`	98.5	97.07 / 31.435	Review
`TkA04G339880`	`LXL04_037731`	`JCVI_TKOH_00199`	74.6	92.058 / 39.62	Complex
`TkA04G339950`	`LXL04_037729`	`JCVI_TKOH_00199`	100.0	87.097 / 66.033	Complex
`TkA04G340050`	`LXL04_037731`	`JCVI_TKOH_00199`	75.9	90.749 / 48.873	Complex
`TkA04G340070`	`LXL04_037726`	`JCVI_TKOH_00199`	78.5	72.789 / 41.154	Review
`TkA04G340090`	`LXL04_037732`	`JCVI_TKOH_00199`	100.0	100.0 / 100.0	Complex
`TkA04G340100`	`LXL04_037733`	`JCVI_TKOH_00199`	86.5	100.0 / 100.0	Complex
`TkA04G340730`	`LXL04_037696`	`JCVI_TKOH_00199`	69.4	82.578 / 81.02	Complex
`TkA04G341680`	`LXL04_037705`	`JCVI_TKOH_00199`	98.7	98.101 / 43.601	Review
`TkA04G341960`	`LXL04_037709`	`JCVI_TKOH_00199`	97.1	96.658 / 64.716	Complex
`TkA04G342290`	`LXL04_037713`	`JCVI_TKOH_00199`	96.2	100.0 / 100.0	Complex
`TkA04G343120`	`LXL04_037716`	`JCVI_TKOH_00199`	94.6	100.0 / 100.0	Complex
`TkA04G343140`	`LXL04_037717`	`JCVI_TKOH_00199`	74.2	99.174 / 28.436	Complex
`TkA04G343150`	`LXL04_037719`	`JCVI_TKOH_00199`	97.8	89.447 / 66.855	Complex
`TkA04G343390`	`LXL04_037729`	`JCVI_TKOH_00199`	93.0	71.93 / 76.63	Complex
`TkA04G343630`	`LXL04_037731`	`JCVI_TKOH_00199`	81.6	99.306 / 74.021	Complex
`TkA04G343700`	`LXL04_037729`	`JCVI_TKOH_00199`	100.0	72.208 / 79.076	Complex
`TkA04G343790`	`LXL04_037731`	`JCVI_TKOH_00199`	89.1	96.291 / 89.442	Complex
`TkA04G343800`	`LXL04_037726`	`JCVI_TKOH_00199`	78.5	72.789 / 41.154	Complex
`TkA04G343820`	`LXL04_037732`	`JCVI_TKOH_00199`	100.0	100.0 / 100.0	Complex
`TkA04G343830`	`LXL04_037733`	`JCVI_TKOH_00199`	86.5	100.0 / 100.0	Complex
`TkA04G344010`	`LXL04_037739`	`JCVI_TKOH_00199`	99.4	100.0 / 100.0	Complex
`TkA04G344190`	`LXL04_037741`	`JCVI_TKOH_00199`	100.0	100.0 / 100.0	Complex
`TkA04G344300`	`LXL04_037745`	`JCVI_TKOH_00199`	100.0	100.0 / 100.0	Review
`TkA04G344470`	`LXL04_037748`	`JCVI_TKOH_00199`	99.3	100.0 / 100.0	Complex
`TkA04G344900`	`LXL04_037750`	`JCVI_TKOH_00199`	100.0	100.0 / 81.633	Complex
`TkA04G344950`	`LXL04_037750`	`JCVI_TKOH_00199`	98.6	100.0 / 81.633	Complex
`TkA04G345120`	`LXL04_037752`	`JCVI_TKOH_00199`	89.2	99.548 / 66.27	Review
`TkA04G345840`	`LXL04_037745`	`JCVI_TKOH_00199`	100.0	100.0 / 100.0	Complex
`TkA04G345940`	`LXL04_037748`	`JCVI_TKOH_00199`	99.8	100.0 / 100.0	Review
`TkA04G345950`	`LXL04_037749`	`JCVI_TKOH_00199`	85.7	100.0 / 100.0	Complex
`TkA04G346190`	`LXL04_037750`	`JCVI_TKOH_00199`	98.6	99.429 / 79.365	Complex
`TkA04G346440`	`LXL04_037748`	`JCVI_TKOH_00199`	85.1	99.259 / 30.645	Complex
`TkA04G346570`	`LXL04_037752`	`JCVI_TKOH_00199`	93.5	82.069 / 36.701	Complex
`TkA04G346680`	`LXL04_037753`	`JCVI_TKOH_00199`	92.4	100.0 / 100.0	Review
`TkA04G348060`	`LXL04_037763`	`JCVI_TKOH_00199`	98.0	100.0 / 100.0	Review
`TkA04G348280`	`LXL04_037766`	`JCVI_TKOH_00199`	100.0	100.0 / 100.0	Complex
`TkA04G348670`	`LXL04_037769`	`JCVI_TKOH_00199`	99.5	100.0 / 95.902	Strict
`TkA04G349150`	`LXL04_037771`	`JCVI_TKOH_00199`	91.4	100.0 / 85.986	Complex
`TkA04G349670`	`LXL04_037773`	`JCVI_TKOH_00199`	99.2	100.0 / 100.0	Review
`TkA04G349690`	`LXL04_037775`	`JCVI_TKOH_00199`	96.0	100.0 / 100.0	Strict
`TkA04G349920`	`LXL04_037777`	`JCVI_TKOH_00199`	96.8	100.0 / 100.0	Strict
`TkA04G350060`	`LXL04_037778`	`JCVI_TKOH_00199`	100.0	100.0 / 99.482	Complex
`TkA04G350140`	`LXL04_037783`	`JCVI_TKOH_00199`	76.8	99.804 / 99.227	Complex
`TkA04G350360`	`LXL04_037782`	`JCVI_TKOH_00199`	99.7	100.0 / 100.0	Complex
`TkA04G350430`	`LXL04_037783`	`JCVI_TKOH_00199`	99.7	100.0 / 100.0	Complex
`TkA04G350770`	`LXL04_037782`	`JCVI_TKOH_00199`	81.9	89.492 / 29.057	Complex
`TkA04G350780`	`LXL04_037782`	`JCVI_TKOH_00199`	98.6	80.925 / 13.703	Complex
`TkA04G351210`	`LXL04_037788`	`JCVI_TKOH_00199`	100.0	100.0 / 89.698	Complex
`TkA04G351220`	`LXL04_037789`	`JCVI_TKOH_00199`	100.0	100.0 / 100.0	Complex
`TkA04G351470`	`LXL04_037795`	`JCVI_TKOH_00199`	98.8	86.294 / 18.418	Review
`TkA04G351600`	`LXL04_037796`	`JCVI_TKOH_00199`	98.8	96.188 / 63.65	Complex
`TkA04G352250`	`LXL04_037800`	`JCVI_TKOH_00199`	100.0	100.0 / 100.0	Review
`TkA04G352380`	`LXL04_037801`	`JCVI_TKOH_00199`	100.0	100.0 / 100.0	Complex
`TkA04G352390`	`LXL04_037802`	`JCVI_TKOH_00199`	93.5	100.0 / 100.0	Complex
`TkA04G352710`	`LXL04_037805`	`JCVI_TKOH_00199`	100.0	100.0 / 72.772	Probable
`TkA04G352900`	`LXL04_037811`	`JCVI_TKOH_00199`	99.3	87.975 / 48.432	Review
`TkA04G353220`	`LXL04_037813`	`JCVI_TKOH_00199`	100.0	100.0 / 100.0	Review
`TkA04G353930`	`LXL04_037817`	`JCVI_TKOH_00199`	95.0	93.399 / 94.118	Strict
`TkA04G353960`	`LXL04_037820`	`JCVI_TKOH_00199`	100.0	100.0 / 85.27	Review
`TkA04G355270`	`LXL04_037824`	`JCVI_TKOH_00199`	100.0	100.0 / 100.0	Strict
`TkA04G355280`	`LXL04_037825`	`JCVI_TKOH_00199`	100.0	100.0 / 79.47	Probable
`TkA04G355490`	`LXL04_037829`	`JCVI_TKOH_00199`	99.2	91.622 / 71.888	Probable
`TkA04G355690`	`LXL04_037832`	`JCVI_TKOH_00199`	100.0	100.0 / 100.0	Strict
`TkA04G355990`	`LXL04_037834`	`JCVI_TKOH_00199`	95.3	98.462 / 46.154	Review
`TkA04G356020`	`LXL04_037836`	`JCVI_TKOH_00199`	83.4	100.0 / 100.0	Complex
`TkA04G356250`	`LXL04_037841`	`JCVI_TKOH_00199`	99.0	100.0 / 100.0	Strict