Orthology / Synteny Evidence

Inspect cross-reference orthology and synteny-block evidence.

TkA01G624900 LXL04_000258 JCVI_TKOH_00001 Gene ID Converter

Evidence boundary: TK1151 and OH-1004 are different materials of the same species. This page shows ortholog and synteny ID correspondence between two reference genomes, not a same-cultivar genome-version upgrade. Blocks are based on DIAMOND RBH plus coordinate-order anchors and can be further refined by MCScanX/JCVI. JCVI_TKOH_ block IDs are also accepted.

Global Block Summary

Synteny blocks

427

ID converter records

84884

High confidence

302

Medium confidence

125

Material	Assembly	Genes	Gap runs	Telomere scan
TK1151	`TK1151_GWHBCHF00000000`	45224	1917	0/9
OH-1004	`OH1004_GCA_047496595.1`	40057	131	0/711

Query Interpretation

Input ID

JCVI_TKOH_00130

Query type

Block ID

Crosswalk plus synteny evidence

Resolved gene

None

No rubber dandelion gene was resolved

Linked evidence

0 / 1 / 46

crosswalk / blocks / anchors

Best block: JCVI_TKOH_00130

The query resolves to a synteny-block ID. Block span and anchor genes are shown first.

Gene ID Converter Download current result

Linear Synteny View

The best synteny block for the current query is shown as a linear ribbon.

JCVI_TKOH_00130 Chr03 31313394-34038535 Chr02 36052110-39038618 mixed High 46 anchors

High Medium Other Only the first 12 anchors are drawn

The anchor table is paginated; TSV contains all anchors for the current query. The ribbon shows only a partial linear backbone of the current block.

Current Query Evidence

No ID correspondence record is available for the current query.

Synteny Evidence

Block	Query location	Target location	Orientation	Current mapped anchors	Confidence	Note
`JCVI_TKOH_00130`	Chr03:31313394-34038535	Chr02:36052110-39038618	mixed	46	High	Formal JCVI synteny block from rebuilt ID map pipeline.

Block Anchor Genes

Total anchors: 46 · Showing 1–46 · Page 1/1

Download All Anchors TSV

TkA03G122500 → LXL04_007098

100.0%

TkA03G122540 → LXL04_007099

98.9%

TkA03G122880 → LXL04_007102

95.4%

TkA03G124210 → LXL04_007109

99.2%

TkA03G124280 → LXL04_007116

98.3%

TkA03G124300 → LXL04_007109

81.8%

TkA03G124570 → LXL04_007120

86.4%

TkA03G124580 → LXL04_007121

100.0%

TkA03G124790 → LXL04_007122

97.4%

TkA03G125040 → LXL04_007127

99.7%

TkA03G125580 → LXL04_007133

95.3%

TkA03G125590 → LXL04_007129

99.5%

TK1151 gene	OH-1004 gene	Block	Identity	Coverage	Confidence
`TkA03G122500`	`LXL04_007098`	`JCVI_TKOH_00130`	100.0	100.0 / 100.0	Complex
`TkA03G122540`	`LXL04_007099`	`JCVI_TKOH_00130`	98.9	100.0 / 100.0	Complex
`TkA03G122880`	`LXL04_007102`	`JCVI_TKOH_00130`	95.4	86.0 / 51.793	Review
`TkA03G124210`	`LXL04_007109`	`JCVI_TKOH_00130`	99.2	100.0 / 100.0	Review
`TkA03G124280`	`LXL04_007116`	`JCVI_TKOH_00130`	98.3	100.0 / 76.433	Complex
`TkA03G124300`	`LXL04_007109`	`JCVI_TKOH_00130`	81.8	100.0 / 95.316	Complex
`TkA03G124570`	`LXL04_007120`	`JCVI_TKOH_00130`	86.4	93.687 / 87.826	Complex
`TkA03G124580`	`LXL04_007121`	`JCVI_TKOH_00130`	100.0	100.0 / 85.299	Strict
`TkA03G124790`	`LXL04_007122`	`JCVI_TKOH_00130`	97.4	100.0 / 24.635	Review
`TkA03G125040`	`LXL04_007127`	`JCVI_TKOH_00130`	99.7	84.419 / 17.812	Complex
`TkA03G125580`	`LXL04_007133`	`JCVI_TKOH_00130`	95.3	25.911 / 26.25	Complex
`TkA03G125590`	`LXL04_007129`	`JCVI_TKOH_00130`	99.5	98.618 / 60.616	Review
`TkA03G125600`	`LXL04_007130`	`JCVI_TKOH_00130`	99.1	100.0 / 47.835	Review
`TkA03G126030`	`LXL04_007132`	`JCVI_TKOH_00130`	97.6	100.0 / 100.0	Complex
`TkA03G126050`	`LXL04_007133`	`JCVI_TKOH_00130`	82.5	100.0 / 100.0	Complex
`TkA03G126260`	`LXL04_007137`	`JCVI_TKOH_00130`	97.3	100.0 / 100.0	Complex
`TkA03G126590`	`LXL04_007140`	`JCVI_TKOH_00130`	91.6	90.252 / 31.748	Complex
`TkA03G126950`	`LXL04_007140`	`JCVI_TKOH_00130`	88.0	66.169 / 14.602	Complex
`TkA03G126990`	`LXL04_007140`	`JCVI_TKOH_00130`	97.7	100.0 / 100.0	Complex
`TkA03G127040`	`LXL04_007142`	`JCVI_TKOH_00130`	100.0	100.0 / 100.0	Complex
`TkA03G127070`	`LXL04_007144`	`JCVI_TKOH_00130`	85.4	100.0 / 100.0	Complex
`TkA03G127110`	`LXL04_007144`	`JCVI_TKOH_00130`	76.9	99.673 / 32.278	Complex
`TkA03G127250`	`LXL04_007144`	`JCVI_TKOH_00130`	57.4	100.0 / 47.702	Complex
`TkA03G127300`	`LXL04_007144`	`JCVI_TKOH_00130`	66.1	89.535 / 49.745	Complex
`TkA03G127420`	`LXL04_007150`	`JCVI_TKOH_00130`	97.0	95.789 / 27.639	Review
`TkA03G127450`	`LXL04_007144`	`JCVI_TKOH_00130`	78.0	47.619 / 5.107	Complex
`TkA03G127630`	`LXL04_007156`	`JCVI_TKOH_00130`	100.0	100.0 / 100.0	Review
`TkA03G127980`	`LXL04_007158`	`JCVI_TKOH_00130`	98.7	100.0 / 100.0	Complex
`TkA03G128010`	`LXL04_007160`	`JCVI_TKOH_00130`	99.7	99.798 / 99.798	Review
`TkA03G128690`	`LXL04_007160`	`JCVI_TKOH_00130`	99.7	99.026 / 30.839	Review
`TkA03G128700`	`LXL04_007160`	`JCVI_TKOH_00130`	97.3	99.407 / 51.668	Review
`TkA03G128790`	`LXL04_007158`	`JCVI_TKOH_00130`	98.6	100.0 / 100.0	Complex
`TkA03G129080`	`LXL04_007156`	`JCVI_TKOH_00130`	99.0	71.223 / 64.706	Complex
`TkA03G129970`	`LXL04_007169`	`JCVI_TKOH_00130`	94.8	100.0 / 100.0	Probable
`TkA03G129980`	`LXL04_007170`	`JCVI_TKOH_00130`	98.3	47.714 / 48.78	Review
`TkA03G130260`	`LXL04_007173`	`JCVI_TKOH_00130`	99.8	100.0 / 100.0	Strict
`TkA03G130640`	`LXL04_007176`	`JCVI_TKOH_00130`	100.0	100.0 / 100.0	Strict
`TkA03G130660`	`LXL04_007177`	`JCVI_TKOH_00130`	96.4	100.0 / 100.0	Strict
`TkA03G130670`	`LXL04_007178`	`JCVI_TKOH_00130`	98.5	74.432 / 14.703	Review
`TkA03G130760`	`LXL04_007180`	`JCVI_TKOH_00130`	97.2	100.0 / 100.0	Complex
`TkA03G130830`	`LXL04_007181`	`JCVI_TKOH_00130`	98.7	87.5 / 100.0	Review
`TkA03G130880`	`LXL04_007181`	`JCVI_TKOH_00130`	83.1	100.0 / 100.0	Complex
`TkA03G130890`	`LXL04_007183`	`JCVI_TKOH_00130`	98.5	100.0 / 100.0	Strict
`TkA03G130900`	`LXL04_007184`	`JCVI_TKOH_00130`	95.8	99.426 / 86.141	Strict
`TkA03G131340`	`LXL04_007187`	`JCVI_TKOH_00130`	100.0	100.0 / 15.789	Review
`TkA03G132830`	`LXL04_007198`	`JCVI_TKOH_00130`	100.0	100.0 / 100.0	Strict