Orthology / Synteny Evidence

Inspect cross-reference orthology and synteny-block evidence.

TkA01G624900 LXL04_000258 JCVI_TKOH_00001 Gene ID Converter

Evidence boundary: TK1151 and OH-1004 are different materials of the same species. This page shows ortholog and synteny ID correspondence between two reference genomes, not a same-cultivar genome-version upgrade. Blocks are based on DIAMOND RBH plus coordinate-order anchors and can be further refined by MCScanX/JCVI. JCVI_TKOH_ block IDs are also accepted.

Global Block Summary

Synteny blocks

427

ID converter records

84884

High confidence

302

Medium confidence

125

Material	Assembly	Genes	Gap runs	Telomere scan
TK1151	`TK1151_GWHBCHF00000000`	45224	1917	0/9
OH-1004	`OH1004_GCA_047496595.1`	40057	131	0/711

Query Interpretation

Input ID

JCVI_TKOH_00004

Query type

Block ID

Crosswalk plus synteny evidence

Resolved gene

None

No rubber dandelion gene was resolved

Linked evidence

0 / 1 / 266

crosswalk / blocks / anchors

Best block: JCVI_TKOH_00004

The query resolves to a synteny-block ID. Block span and anchor genes are shown first.

Gene ID Converter Download current result

Linear Synteny View

The best synteny block for the current query is shown as a linear ribbon.

JCVI_TKOH_00004 Chr01 7986373-20414648 Chr01 156617442-169107166 mixed High 66 anchors

High Medium Other Only the first 12 anchors are drawn

The anchor table is paginated; TSV contains all anchors for the current query. The ribbon shows only a partial linear backbone of the current block.

Current Query Evidence

No ID correspondence record is available for the current query.

Synteny Evidence

Block	Query location	Target location	Orientation	Current mapped anchors	Confidence	Note
`JCVI_TKOH_00004`	Chr01:7986373-20414648	Chr01:156617442-169107166	mixed	266	High	Formal JCVI synteny block from rebuilt ID map pipeline.

Block Anchor Genes

Total anchors: 266 · Showing 201–266 · Page 2/2

Previous Download All Anchors TSV

TkA01G071160 → LXL04_005267

82.7%

TkA01G071450 → LXL04_005263

71.6%

TkA01G071470 → LXL04_005262

98.2%

TkA01G071610 → LXL04_005260

99.4%

TkA01G071770 → LXL04_005259

99.5%

TkA01G071830 → LXL04_005258

99.9%

TkA01G071950 → LXL04_005256

97.8%

TkA01G072170 → LXL04_005255

98.5%

TkA01G072320 → LXL04_005253

98.2%

TkA01G072350 → LXL04_005251

96.8%

TkA01G072670 → LXL04_005244

100.0%

TkA01G073300 → LXL04_005248

99.7%

TK1151 gene	OH-1004 gene	Block	Identity	Coverage	Confidence
`TkA01G071160`	`LXL04_005267`	`JCVI_TKOH_00004`	82.7	100.0 / 100.0	Review
`TkA01G071450`	`LXL04_005263`	`JCVI_TKOH_00004`	71.6	100.0 / 100.0	Complex
`TkA01G071470`	`LXL04_005262`	`JCVI_TKOH_00004`	98.2	98.667 / 100.0	Strict
`TkA01G071610`	`LXL04_005260`	`JCVI_TKOH_00004`	99.4	100.0 / 100.0	Complex
`TkA01G071770`	`LXL04_005259`	`JCVI_TKOH_00004`	99.5	100.0 / 100.0	Strict
`TkA01G071830`	`LXL04_005258`	`JCVI_TKOH_00004`	99.9	96.694 / 65.181	Complex
`TkA01G071950`	`LXL04_005256`	`JCVI_TKOH_00004`	97.8	100.0 / 100.0	Strict
`TkA01G072170`	`LXL04_005255`	`JCVI_TKOH_00004`	98.5	96.286 / 59.541	Review
`TkA01G072320`	`LXL04_005253`	`JCVI_TKOH_00004`	98.2	100.0 / 100.0	Strict
`TkA01G072350`	`LXL04_005251`	`JCVI_TKOH_00004`	96.8	100.0 / 100.0	Complex
`TkA01G072670`	`LXL04_005244`	`JCVI_TKOH_00004`	100.0	100.0 / 77.358	Probable
`TkA01G073300`	`LXL04_005248`	`JCVI_TKOH_00004`	99.7	100.0 / 52.441	Review
`TkA01G073340`	`LXL04_005249`	`JCVI_TKOH_00004`	97.0	100.0 / 100.0	Complex
`TkA01G073350`	`LXL04_005250`	`JCVI_TKOH_00004`	99.3	100.0 / 100.0	Strict
`TkA01G073630`	`LXL04_005214`	`JCVI_TKOH_00004`	100.0	96.33 / 84.677	Complex
`TkA01G073650`	`LXL04_005213`	`JCVI_TKOH_00004`	100.0	100.0 / 100.0	Strict
`TkA01G073780`	`LXL04_005238`	`JCVI_TKOH_00004`	99.7	100.0 / 56.874	Review
`TkA01G073790`	`LXL04_005237`	`JCVI_TKOH_00004`	100.0	100.0 / 100.0	Complex
`TkA01G074040`	`LXL04_005234`	`JCVI_TKOH_00004`	99.0	100.0 / 100.0	Review
`TkA01G074120`	`LXL04_005234`	`JCVI_TKOH_00004`	96.0	99.833 / 99.833	Complex
`TkA01G074560`	`LXL04_005233`	`JCVI_TKOH_00004`	97.6	100.0 / 100.0	Strict
`TkA01G074600`	`LXL04_005232`	`JCVI_TKOH_00004`	95.8	100.0 / 83.828	Strict
`TkA01G074880`	`LXL04_005223`	`JCVI_TKOH_00004`	100.0	100.0 / 100.0	Complex
`TkA01G075280`	`LXL04_005222`	`JCVI_TKOH_00004`	100.0	100.0 / 55.496	Review
`TkA01G075290`	`LXL04_005221`	`JCVI_TKOH_00004`	86.6	100.0 / 51.867	Review
`TkA01G075440`	`LXL04_005215`	`JCVI_TKOH_00004`	92.2	84.507 / 85.906	Probable
`TkA01G075520`	`LXL04_005214`	`JCVI_TKOH_00004`	100.0	96.33 / 84.677	Complex
`TkA01G075750`	`LXL04_005212`	`JCVI_TKOH_00004`	100.0	100.0 / 92.647	Strict
`TkA01G075780`	`LXL04_005211`	`JCVI_TKOH_00004`	72.9	98.165 / 47.982	Review
`TkA01G075810`	`LXL04_005210`	`JCVI_TKOH_00004`	100.0	99.18 / 50.207	Review
`TkA01G076090`	`LXL04_005207`	`JCVI_TKOH_00004`	100.0	100.0 / 100.0	Strict
`TkA01G076120`	`LXL04_005204`	`JCVI_TKOH_00004`	98.7	100.0 / 100.0	Strict
`TkA01G076480`	`LXL04_005200`	`JCVI_TKOH_00004`	100.0	100.0 / 70.968	Complex
`TkA01G076490`	`LXL04_005199`	`JCVI_TKOH_00004`	100.0	100.0 / 100.0	Review
`TkA01G076710`	`LXL04_005198`	`JCVI_TKOH_00004`	100.0	100.0 / 100.0	Strict
`TkA01G076800`	`LXL04_005197`	`JCVI_TKOH_00004`	93.5	97.527 / 25.87	Complex
`TkA01G076870`	`LXL04_005194`	`JCVI_TKOH_00004`	95.9	90.654 / 45.972	Review
`TkA01G077100`	`LXL04_005197`	`JCVI_TKOH_00004`	67.5	94.605 / 46.566	Review
`TkA01G077160`	`LXL04_005193`	`JCVI_TKOH_00004`	100.0	100.0 / 100.0	Strict
`TkA01G077320`	`LXL04_005191`	`JCVI_TKOH_00004`	100.0	97.368 / 77.487	Probable
`TkA01G077360`	`LXL04_005190`	`JCVI_TKOH_00004`	95.5	100.0 / 97.61	Review
`TkA01G077370`	`LXL04_005189`	`JCVI_TKOH_00004`	99.0	100.0 / 100.0	Strict
`TkA01G077380`	`LXL04_005188`	`JCVI_TKOH_00004`	100.0	100.0 / 100.0	Strict
`TkA01G077390`	`LXL04_005187`	`JCVI_TKOH_00004`	100.0	100.0 / 100.0	Complex
`TkA01G077420`	`LXL04_005184`	`JCVI_TKOH_00004`	100.0	100.0 / 100.0	Complex
`TkA01G077440`	`LXL04_005183`	`JCVI_TKOH_00004`	99.8	100.0 / 100.0	Strict
`TkA01G077630`	`LXL04_005182`	`JCVI_TKOH_00004`	99.8	96.346 / 100.0	Strict
`TkA01G077810`	`LXL04_005176`	`JCVI_TKOH_00004`	80.2	100.0 / 99.522	Complex
`TkA01G077970`	`LXL04_005177`	`JCVI_TKOH_00004`	97.4	100.0 / 59.459	Review
`TkA01G077980`	`LXL04_005177`	`JCVI_TKOH_00004`	100.0	73.759 / 17.568	Complex
`TkA01G078000`	`LXL04_005176`	`JCVI_TKOH_00004`	98.9	99.155 / 85.167	Review
`TkA01G078010`	`LXL04_005175`	`JCVI_TKOH_00004`	99.6	100.0 / 100.0	Strict
`TkA01G078210`	`LXL04_005174`	`JCVI_TKOH_00004`	100.0	99.698 / 99.849	Strict
`TkA01G078410`	`LXL04_005171`	`JCVI_TKOH_00004`	100.0	100.0 / 100.0	Strict
`TkA01G078520`	`LXL04_005170`	`JCVI_TKOH_00004`	100.0	100.0 / 100.0	Review
`TkA01G078530`	`LXL04_005169`	`JCVI_TKOH_00004`	98.6	100.0 / 99.887	Strict
`TkA01G078560`	`LXL04_005167`	`JCVI_TKOH_00004`	97.9	100.0 / 100.0	Strict
`TkA01G078910`	`LXL04_005165`	`JCVI_TKOH_00004`	98.2	100.0 / 100.0	Strict
`TkA01G078940`	`LXL04_005164`	`JCVI_TKOH_00004`	99.3	100.0 / 100.0	Strict
`TkA01G079160`	`LXL04_005162`	`JCVI_TKOH_00004`	99.6	100.0 / 39.655	Review
`TkA01G079290`	`LXL04_005159`	`JCVI_TKOH_00004`	99.2	99.185 / 66.364	Review
`TkA01G079300`	`LXL04_005158`	`JCVI_TKOH_00004`	100.0	100.0 / 47.028	Review
`TkA01G079320`	`LXL04_005157`	`JCVI_TKOH_00004`	97.0	98.039 / 41.737	Review
`TkA01G079620`	`LXL04_005156`	`JCVI_TKOH_00004`	99.2	96.748 / 53.604	Review
`TkA01G079720`	`LXL04_005154`	`JCVI_TKOH_00004`	57.4	96.296 / 53.226	Complex
`TkA01G079770`	`LXL04_005153`	`JCVI_TKOH_00004`	99.1	86.154 / 100.0	Strict