Complete public expression matrices and reproducibility resources

Uniform v4: 98,473 fixed reconstruction loci and 109 public RNA-seq runs. Coverage, FPKM and TPM are provided separately.

Download the reviewer package

Matrices and reproducibility resources ZIP · SHA-256

Includes three complete matrices, sample/source metadata, fixed model, gene mappings, documentation, verification and matrix reconstruction scripts.

Complete matrices

Metric	Loci × runs	Uncompressed size	Download	SHA-256 (TSV)
COVERAGE	98,473 × 109	57.79 MB	TSV.gz · TSV	`d6f21ad1ac0322dafa3e027b2482defa6990d4a634a2df3495ee3a45f6e51eca`
FPKM	98,473 × 109	56.65 MB	TSV.gz · TSV	`adbf1e60097207700fac9f09c644d26456db10f8472a031a5df2a9e255c3c90f`
TPM	98,473 × 109	57.10 MB	TSV.gz · TSV	`499a3298df26fc29a72a53cecf5cb51427b03bdb530da56be3768ba0aa3b3dd1`

Supporting resources

Use and reproducibility scope

Verify/reuse complete processed matrices and reconstruct them from per-run StringTie outputs using the frozen model and script. Raw RNA-seq was not rerun for this package; historical HISAT2/samtools versions and reference-index build records were not independently revalidated. Different studies do not form one biological replicate set, and missing sample metadata are not inferred.