TkA06G338100 | RubberDandelionOmics

Gene overview

TkA06G338100

Reference: TK1151 Chr: Chr06 Coordinates: 84089477-84091010 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

948 bp · TkA06G338100|TK1151|cDNA

GCCACAGTTAAGGGTTAGCTTTGTAATATAGTCCGGTGTGGCGGTGTTACTCGGCTATAACCTCCCGATCTTATCCCTTGCTTCTCTAGAGTGCAGAAATGAGTACCGCTGTCCCCTTCTCTCTTCTGCCTCTTTCACCCATCAAATCCTCCTCCTCCTCCTCCTCCGCCTCCTCCCCACCACCACCAACACCATCCAACCGCCACTACCGCACCATTAATATAACATGTTCATCTTCTTCCAAATCCAATAACAGCCAC...

CDS

Download CDS FASTA

675 bp · TkA06G338100|TK1151|CDS

ATGAGTACCGCTGTCCCCTTCTCTCTTCTGCCTCTTTCACCCATCAAATCCTCCTCCTCCTCCTCCTCCGCCTCCTCCCCACCACCACCAACACCATCCAACCGCCACTACCGCACCATTAATATAACATGTTCATCTTCTTCCAAATCCAATAACAGCCACCTGTTAAAACCCAAACAACACCTCAACTTGAGCAGAAGAGAAGCGATTGGATTTGGGCTGTGTCTCAAGTTTCTGGATGCGGTTGTATCACCTCAACC...

Protein

Download Protein FASTA

224 aa · TkA06G338100|TK1151|PROTEIN

MSTAVPFSLLPLSPIKSSSSSSSASSPPPPTPSNRHYRTINITCSSSSKSNNSHLLKPKQHLNLSRREAIGFGLCLKFLDAVVSPQPSSAAADSTTATPCEFTLADSGLAFCDKLVGYGPQPEKGQLIKAHYVGKLESGKVFDSSYNRGKPLTFRVGVGEVIKGWDQGILGGDGVPPMLAGGKRTLKLPPQLGYGMRGAGCKGGSCIIPPDSVLLFDVEFIGKA

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA06G338100`
TK1151 ID	TkA06G338100
OH-1004 ID	LXL04_023429
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	99.600
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA06G338100

Location Chr06:84089477-84091010 (-)

Description Similar to FKBP13: Peptidyl-prolyl cis-trans isomerase FKBP13, chloroplastic

Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g45680`	PPIases accelerate the folding of proteins.	Profound redox sensitivity of peptidyl-prolyl isomerase activity in Arabidopsis thylakoid lumen.2006 · DOI: 10.1016/j.febslet.2006.05.054 Immunophilin AtFKBP13 sustains all peptidyl-prolyl isomerase activity in the thylakoid lumen from Arabidopsis thaliana deficient in AtCYP20-2.2007 · DOI: 10.1021/bi700426q Peptidyl-prolyl isomerase activity in chloroplast thylakoid lumen is a dispensable function of immunophilins in Arabidopsis thaliana.2009 · DOI: 10.1093/pcp/pcp122
`At4g39710`	NDH shuttles electrons from NAD(P)H:plastoquinone, via FMN and iron-sulfur (Fe-S) centers, to quinones in the photosynthetic chain and possibly in a chloroplast respiratory chain.	Efficient operation of NAD(P)H dehydrogenase requires supercomplex formation with photosystem I via minor LHCI in Arabidopsis.2009 · DOI: 10.1105/tpc.109.068791

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_023429 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0005576 extracellular region Cellular Component

GO:0005783 endoplasmic reticulum Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0009535 chloroplast thylakoid membrane Cellular Component

GO:0009536 plastid Cellular Component

GO:0009543 chloroplast thylakoid lumen Cellular Component

GO:0009579 thylakoid Cellular Component

GO:0031977 thylakoid lumen Cellular Component

GO:0003755 peptidyl-prolyl cis-trans isomerase activity Molecular Function

KEGG gene cross-reference

ath:AT4G39710

ath:AT5G45680

ddi:DDB_G0282267

kla:KLLA0_C01045g

nma:NMA0273

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.981

Rank 1 · TkA06G338100 · TK1151

Mitochondrion0.023

Rank 2 · TkA06G338100 · TK1151

Nucleus0.013

Rank 3 · TkA06G338100 · TK1151

Cytoplasm0.011

Rank 4 · TkA06G338100 · TK1151

Cell membrane0.009

Rank 5 · TkA06G338100 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00254FKBP_C120-220 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA06G338100	`PF00254`	FKBP_C	120	220	5.5e-29	101.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9SCY2`	Arabidopsis thaliana	sp\|Q9SCY2\|FKB13_ARATH Peptidyl-prolyl cis-trans isomerase FKBP13, chloroplastic	73.800%	Swiss-Prot	High
`Q9SCY3`	Arabidopsis thaliana	sp\|Q9SCY3\|PNSL4_ARATH Photosynthetic NDH subunit of lumenal location 4, chloroplastic	49.000%	Swiss-Prot	Medium

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