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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA06G212870
Reference: TK1151 Chr: Chr06 Coordinates: 55144917-55146481 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

553 bp · TkA06G212870|TK1151|cDNA

CTTAACTTGAAGACTAGGATAAGTAAAGTTTACGCGCCCACAGCGCGTGATATCAGACACAAAAAATATACCTCGCGTGTGGAACCTCACCGCAACTACGAGTGGTAATTCAGTCGCCATGTTCACTCCTTTCGGAAAGGCGGCAACATCCTGTAAATAAGCCCAAAATCCAGTGGAAGACACAGAAATTCAGCACGAAGAAATGGATTCGCAAAACGACTTCGATCGGCTTCTCTTCTTTGAGCATGCTCGCCGGAGTG...

CDS

Download CDS FASTA

618 bp · TkA06G212870|TK1151|CDS

ATGGATTCGCAAAACGACTTCGATCGGCTTCTCTTCTTTGAGCATGCTCGCCGGAGTGCGGAAGTGACTTATGCGAAAAATCCTCTCGATACCGAGAACCTAACCAGATGGGGAGGGGCGTTGCTTGAACTGTCGACCTTCCAGAGTGTTCAGGAATCAAAATCTATGATTAAAGATGCTATATCAAAATTAGACGAAGCATTATCGATTGATCCAAGGAAACATGACGCGTTGTGGTGTATGGGCAATGCACAAACTTC...

Protein

Download Protein FASTA

205 aa · TkA06G212870|TK1151|PROTEIN

MDSQNDFDRLLFFEHARRSAEVTYAKNPLDTENLTRWGGALLELSTFQSVQESKSMIKDAISKLDEALSIDPRKHDALWCMGNAQTSYAFLTPDKSEAKGYFDSAYTYFQQAVEEDPGNELYRKSFEVSTKAPELHAEVHSQSLSQQAMGFGSGGGPSSSSSVRGPKAQKNSDLKYDIFGWVILAVTVVAWVGFAKTNVPSPPSR

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA06G212870
TK1151 IDTkA06G212870
OH-1004 IDLXL04_023828
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)100.000
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA06G212870
LocationChr06:55144917-55146481 (+)
DescriptionSimilar to TOM20: Mitochondrial import receptor subunit TOM20
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g27080 Central component of the receptor complex responsible for the recognition and translocation of cytosolically synthesized mitochondrial preproteins. No verified direct reference in this release
At1g27390 Central component of the receptor complex responsible for the recognition and translocation of cytosolically synthesized mitochondrial preproteins. No verified direct reference in this release
At5g40930 Central component of the receptor complex responsible for the recognition and translocation of cytosolically synthesized mitochondrial preproteins. No verified direct reference in this release
At3g27070 Central component of the receptor complex responsible for the recognition and translocation of cytosolically synthesized mitochondrial preproteins. No verified direct reference in this release

Rice

Reference gene IDPossible functionPapers / DOI
UniProt: A2WYG9 Central component of the receptor complex responsible for the recognition and translocation of cytosolically synthesized mitochondrial preproteins. No verified direct reference in this release
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_023828 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006626 protein targeting to mitochondrion Biological Process
GO:0015031 protein transport Biological Process
GO:0045040 protein insertion into mitochondrial outer membrane Biological Process
GO:0000325 plant-type vacuole Cellular Component
GO:0005634 nucleus Cellular Component
GO:0005739 mitochondrion Cellular Component
GO:0005741 mitochondrial outer membrane Cellular Component
GO:0005742 mitochondrial outer membrane translocase complex Cellular Component
GO:0005743 mitochondrial inner membrane Cellular Component
GO:0005744 TIM23 mitochondrial import inner membrane translocase complex Cellular Component
GO:0005829 cytosol Cellular Component
GO:0009536 plastid Cellular Component
KEGG gene cross-reference
ath:AT1G27390
ath:AT3G27080
ath:AT5G40930
sot:102603648
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.372
Rank 1 · TkA06G212870 · TK1151
Plastid0.222
Rank 2 · TkA06G212870 · TK1151
Cytoplasm0.151
Rank 3 · TkA06G212870 · TK1151
Endoplasmic reticulum0.119
Rank 4 · TkA06G212870 · TK1151
Peroxisome0.108
Rank 5 · TkA06G212870 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF06552TOM20_plant7-196 aa
PF21033RMD1-313-81 aa
PF13428TPR_1414-36 aa
PF21033RMD1-354-125 aa
PF00515TPR_156-73 aa
PF07719TPR_258-73 aa
PF13414TPR_1158-85 aa
PF14559TPR_1958-79 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA06G212870PF06552TOM20_plant71964.4e-90301.2
TkA06G212870PF21033RMD1-313811.9e-0524.7
TkA06G212870PF13428TPR_1414360.01117.0
TkA06G212870PF21033RMD1-3541251.9e-0524.7
TkA06G212870PF00515TPR_156730.03114.8
TkA06G212870PF07719TPR_258730.0001122.8
TkA06G212870PF13414TPR_1158850.001518.9
TkA06G212870PF14559TPR_1958790.003518.3
TkA06G212870PF13428TPR_1458790.01117.0
TkA06G212870PF13176TPR_759720.2512.2
TkA06G212870PF13181TPR_860720.07214.0
TkA06G212870PF13428TPR_14971220.01117.0
TkA06G212870PF13176TPR_7971190.2512.2
TkA06G212870PF07719TPR_2981190.0001122.8
TkA06G212870PF13181TPR_8981180.07214.0
TkA06G212870PF13414TPR_11991190.001518.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
P82874Arabidopsis thalianasp|P82874|TO203_ARATH Mitochondrial import receptor subunit TOM20-357.100%Swiss-ProtHigh
P82873Arabidopsis thalianasp|P82873|TO202_ARATH Mitochondrial import receptor subunit TOM20-250.200%Swiss-ProtHigh
P82805Arabidopsis thalianasp|P82805|TO204_ARATH Mitochondrial import receptor subunit TOM20-455.500%Swiss-ProtHigh
P82872Arabidopsis thalianasp|P82872|TO201_ARATH Mitochondrial import receptor subunit TOM20-160.400%Swiss-ProtHigh
A2WYG9Oryza sativa subsp. indicasp|A2WYG9|TOM20_ORYSI Probable mitochondrial import receptor subunit TOM2049.300%Swiss-ProtMedium

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