TkA06G202420 | RubberDandelionOmics

Gene overview

TkA06G202420

Reference: TK1151 Chr: Chr06 Coordinates: 52578938-52582208 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2331 bp · TkA06G202420|TK1151|cDNA

AAACACCCTAATGCTGATACTTATCATATACTATTTTTTTAACAAAACGCCTCCATAGAAAGATGTTGAATTTCAATTTCCCTGGATTCCGATAAACCAAAATGGTCCGGCGCAGATTAGACAGGAACCAGAGATCGCTATCCTATAAGTTATAGCCCATTTTCTCTCTTCTTTTTCTTCCTCTTCGTTCTAATCTCTCTCCCCAATTGCCATCGCTTTCAAATTCGTACCAGTGATCCAAGATTTATCCTCTATTGCCC...

CDS

Download CDS FASTA

1536 bp · TkA06G202420|TK1151|CDS

ATGATCAACAAGATCTTTAATCGGTCTTCTTCTAGAAAGCCAAAATCAAACGATAAAGATCAAGGAAACCCTAATTCATCTTCAAACACATCCACAAGTTCAAGACCTAACAACAACAATGATCAAAACCCTAATCGATTCGCGAATTCAAACCCCCCACCCCCAAATCAACCCTCAAAAAAACCAAACGGAACTTCATACGAACCCCTCCCATCTTTCAAAGACGTCACAAACTCGGAAAAACAAAACCTTTTCATCCG...

Protein

Download Protein FASTA

511 aa · TkA06G202420|TK1151|PROTEIN

MINKIFNRSSSRKPKSNDKDQGNPNSSSNTSTSSRPNNNNDQNPNRFANSNPPPPNQPSKKPNGTSYEPLPSFKDVTNSEKQNLFIRKLKLCSIVFDFTDPTKNTKEKEIKRQTLVELVDYISSASGKFPETVMQEIVNMVSVNIFRRLTPQPRDNKILETFDGDEEEPSMDPSWPHLQLIYEFILRFVASPETDPKLAKRYIDHAFVLKWLDLFDSEDPREREYLKFVLHRMYGKFMVHRPFIRKSINNIFFRFVFETE...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA06G202420`
TK1151 ID	TkA06G202420
OH-1004 ID	LXL04_023874
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	99.600
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA06G202420

Location Chr06:52578938-52582208 (-)

Description Similar to B'ETA: Serine/threonine protein phosphatase 2A 59 kDa regulatory subunit B' eta isoform

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g26020`	The B regulatory subunit may modulate substrate selectivity and catalytic activity, and may also direct the localization of the catalytic enzyme to a particular subcellular compartment (By similarity).	No verified direct reference in this release
`At1g13460`	The B regulatory subunit may modulate substrate selectivity and catalytic activity, and may also direct the localization of the catalytic enzyme to a particular subcellular compartment (By similarity).	No verified direct reference in this release
`At4g15415`	The B regulatory subunit may modulate substrate selectivity and catalytic activity, and may also direct the localization of the catalytic enzyme to a particular subcellular compartment (By similarity).	Regulatory subunit B'gamma of protein phosphatase 2A prevents unnecessary defense reactions under low light in Arabidopsis.2011 · DOI: 10.1104/pp.111.178442
`At3g21650`	The B regulatory subunit may modulate substrate selectivity and catalytic activity, and may also direct the localization of the catalytic enzyme to a particular subcellular compartment (By similarity).	No verified direct reference in this release
`At3g09880`	The B regulatory subunit may modulate substrate selectivity and catalytic activity, and may also direct the localization of the catalytic enzyme to a particular subcellular compartment (By similarity).	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_023874 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0000398 mRNA splicing, via spliceosome Biological Process

GO:0006555 methionine metabolic process Biological Process

GO:0006952 defense response Biological Process

GO:0009554 megasporogenesis Biological Process

GO:0009556 microsporogenesis Biological Process

GO:0009742 brassinosteroid mediated signaling pathway Biological Process

GO:0009759 indole glucosinolate biosynthetic process Biological Process

GO:0009908 flower development Biological Process

GO:0010090 trichome morphogenesis Biological Process

GO:0010150 leaf senescence Biological Process

GO:0031348 negative regulation of defense response Biological Process

GO:0032000 positive regulation of fatty acid beta-oxidation Biological Process

KEGG gene cross-reference

ath:AT1G13460

ath:AT3G09880

ath:AT3G21650

ath:AT3G26020

ath:AT4G15415

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.621

Rank 1 · TkA06G202420 · TK1151

Nucleus0.315

Rank 2 · TkA06G202420 · TK1151

Cell membrane0.135

Rank 3 · TkA06G202420 · TK1151

Lysosome / Vacuole0.092

Rank 4 · TkA06G202420 · TK1151

Golgi apparatus0.085

Rank 5 · TkA06G202420 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01603B5670-481 aa

PF27202Flk_N112-144 aa

PF12783Sec7-like_HUS245-308 aa

PF12783Sec7-like_HUS365-430 aa

PF27202Flk_N379-391 aa

PF27202Flk_N415-429 aa

PF04961FTCD_C441-481 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA06G202420	`PF01603`	B56	70	481	3.7e-189	629.7
TkA06G202420	`PF27202`	Flk_N	112	144	0.18	12.8
TkA06G202420	`PF12783`	Sec7-like_HUS	245	308	0.54	10.8
TkA06G202420	`PF12783`	Sec7-like_HUS	365	430	0.54	10.8
TkA06G202420	`PF27202`	Flk_N	379	391	0.18	12.8
TkA06G202420	`PF27202`	Flk_N	415	429	0.18	12.8
TkA06G202420	`PF04961`	FTCD_C	441	481	0.099	13.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9LU89`	Arabidopsis thaliana	sp\|Q9LU89\|2A5N_ARATH Serine/threonine protein phosphatase 2A 59 kDa regulatory subunit B' eta isoform	79.500%	Swiss-Prot	High
`Q8LF36`	Arabidopsis thaliana	sp\|Q8LF36\|2A5T_ARATH Serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' theta isoform	78.300%	Swiss-Prot	High
`Q8RW96`	Arabidopsis thaliana	sp\|Q8RW96\|2A5G_ARATH Serine/threonine protein phosphatase 2A 59 kDa regulatory subunit B' gamma isoform	73.300%	Swiss-Prot	High
`Q9LVE2`	Arabidopsis thaliana	sp\|Q9LVE2\|2A5Z_ARATH Serine/threonine protein phosphatase 2A 59 kDa regulatory subunit B' zeta isoform	72.700%	Swiss-Prot	High
`O04376`	Arabidopsis thaliana	sp\|O04376\|2A5B_ARATH Serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' beta isoform	66.100%	Swiss-Prot	High

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