TkA05G285290 | RubberDandelionOmics

Gene overview

TkA05G285290

Reference: TK1151 Chr: Chr05 Coordinates: 70470241-70470645 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

405 bp · TkA05G285290|TK1151|cDNA

ATGCGGGGGTCCAAATTCTGTCTAAATCCAGCTGGCGACACGCCTTCCTCAAACCGCCTATTCGACGCTATCGTGAGCCATTGTGTCCCCGTGATCGTGAGTGACCAAATCGAGCTGCCATTCGAAGACGAATTCGACTACACTCAGTTTTCAGTTTTTTTCTCAGTGGAAGAGGCGTTGGTTCCAGGGTACATGGTCCAACAACTTAGAAAAATCCCGAAAGAAAGATGGCTTGAAATGTGGAAAAAACTCAAGCAAAT...

CDS

Download CDS FASTA

405 bp · TkA05G285290|TK1151|CDS

ATGCGGGGGTCCAAATTCTGTCTAAATCCAGCTGGCGACACGCCTTCCTCAAACCGCCTATTCGACGCTATCGTGAGCCATTGTGTCCCCGTGATCGTGAGTGACCAAATCGAGCTGCCATTCGAAGACGAATTCGACTACACTCAGTTTTCAGTTTTTTTCTCAGTGGAAGAGGCGTTGGTTCCAGGGTACATGGTCCAACAACTTAGAAAAATCCCGAAAGAAAGATGGCTTGAAATGTGGAAAAAACTCAAGCAAAT...

Protein

Download Protein FASTA

134 aa · TkA05G285290|TK1151|PROTEIN

MRGSKFCLNPAGDTPSSNRLFDAIVSHCVPVIVSDQIELPFEDEFDYTQFSVFFSVEEALVPGYMVQQLRKIPKERWLEMWKKLKQITHHFEYQYPPKKDDAVNMIWRQVKHKVPPERLAVHRSHRLKVPDWWR

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA05G285290`
TK1151 ID	TkA05G285290
OH-1004 ID	LXL04_020654
Relationship / confidence	Sequence Supported Annotation Or Model Conflict / Review
Protein identity (%)	98.500
Protein coverage (%)	TK1151 100.000 / OH-1004 27.917 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA05G285290

Location Chr05:70470241-70470645 (-)

Description Similar to ARAD1: Probable arabinosyltransferase ARAD1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g35100`	Probable arabinosyl transferase responsible for the polymerization of arabinose into the arabinan of arabinogalactan.	ARABINAN DEFICIENT 1 is a putative arabinosyltransferase involved in biosynthesis of pectic arabinan in Arabidopsis.2006 · DOI: 10.1104/pp.105.072744 Cell wall pectic arabinans influence the mechanical properties of Arabidopsis thaliana inflorescence stems and their response to mechanical stress.2013 · DOI: 10.1093/pcp/pct074
`At5g44930`	Probable arabinosyl transferase responsible for the polymerization of arabinose into the arabinan of arabinogalactan.	Cell wall pectic arabinans influence the mechanical properties of Arabidopsis thaliana inflorescence stems and their response to mechanical stress.2013 · DOI: 10.1093/pcp/pct074
`At3g42180`	May be involved in cell wall biosynthesis.	No verified direct reference in this release
`At5g61840`	Involved in the synthesis of the hemicellulose glucuronoxylan, a major component of secondary cell walls.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os01g0926700`	Involved in the synthesis of glucuronoxylan hemicellulose in secondary cell walls.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_020654 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0009101 glycoprotein biosynthetic process Biological Process

GO:0009832 plant-type cell wall biogenesis Biological Process

GO:0009834 plant-type secondary cell wall biogenesis Biological Process

GO:0010417 glucuronoxylan biosynthetic process Biological Process

GO:0035884 arabinan biosynthetic process Biological Process

GO:0042546 cell wall biogenesis Biological Process

GO:0045489 pectin biosynthetic process Biological Process

GO:0045492 xylan biosynthetic process Biological Process

GO:0071555 cell wall organization Biological Process

GO:0000138 Golgi trans cisterna Cellular Component

GO:0000139 Golgi membrane Cellular Component

GO:0005576 extracellular region Cellular Component

KEGG gene cross-reference

ath:AT2G35100

ath:AT3G42180

ath:AT5G44930

ath:AT5G61840

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Golgi apparatus0.653

Rank 1 · TkA05G285290 · TK1151

Endoplasmic reticulum0.193

Rank 2 · TkA05G285290 · TK1151

Extracellular0.080

Rank 3 · TkA05G285290 · TK1151

Cytoplasm0.058

Rank 4 · TkA05G285290 · TK1151

Cell membrane0.044

Rank 5 · TkA05G285290 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF03016Exostosin_GT471-67 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA05G285290	`PF03016`	Exostosin_GT47	1	67	3.6e-25	89.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q6DBG8`	Arabidopsis thaliana	sp\|Q6DBG8\|ARAD1_ARATH Probable arabinosyltransferase ARAD1	55.100%	Swiss-Prot	High
`Q9FLA5`	Arabidopsis thaliana	sp\|Q9FLA5\|ARAD2_ARATH Probable arabinosyltransferase ARAD2	49.600%	Swiss-Prot	Medium
`Q3EAR7`	Arabidopsis thaliana	sp\|Q3EAR7\|GLYT2_ARATH Probable glycosyltransferase At3g42180	37.400%	Swiss-Prot	Medium
`Q940Q8`	Arabidopsis thaliana	sp\|Q940Q8\|IX10L_ARATH Probable beta-1,4-xylosyltransferase IRX10L	32.800%	Swiss-Prot	Medium
`Q8S1X7`	Oryza sativa subsp. japonica	sp\|Q8S1X7\|GT15_ORYSJ Probable glucuronosyltransferase Os01g0926700	44.100%	Swiss-Prot	Low

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