LXL04_020654 | RubberDandelionOmics

Gene overview

LXL04_020654

Reference: OH-1004 Chr: Chr04 Coordinates: 101927913-101935150 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1443 bp · LXL04_020654|LXL04_020654|OH1004|cDNA

ATGATTGGTAAATCAGTTATATTACTCGTTATCTTCTTGACCGTCATCTTCACCACGTACTTGGTCACAATTGGAGGTTTAGGAGGAGGAGTTGGAAAAGTTGATCTTAGATCTCAGTTCTCTTTTCTATCATCTACCAGGAATGACACCGTTATACCTTGCCACACCGGATCGCCGCTCAGAGTCTTCATGTATGATTTGCCAAAGAGGTTTAATGTCGCTATGTTGAGCAAAAAATTCACAGGACGAGATGATAATTC...

CDS

Download CDS FASTA

1443 bp · LXL04_020654|LXL04_020654|OH1004|CDS

ATGATTGGTAAATCAGTTATATTACTCGTTATCTTCTTGACCGTCATCTTCACCACGTACTTGGTCACAATTGGAGGTTTAGGAGGAGGAGTTGGAAAAGTTGATCTTAGATCTCAGTTCTCTTTTCTATCATCTACCAGGAATGACACCGTTATACCTTGCCACACCGGATCGCCGCTCAGAGTCTTCATGTATGATTTGCCAAAGAGGTTTAATGTCGCTATGTTGAGCAAAAAATTCACAGGACGAGATGATAATTC...

Protein

Download Protein FASTA

480 aa · LXL04_020654|LXL04_020654|OH1004|PROTEIN

MIGKSVILLVIFLTVIFTTYLVTIGGLGGGVGKVDLRSQFSFLSSTRNDTVIPCHTGSPLRVFMYDLPKRFNVAMLSKKFTGRDDNSPVTAKNLPAWPRNSGLKQQHSVEYWLMASLLCENCRNADSSEAVRVSDPEAADVFFVPFFSSLSFNTHGRNMTDPDTEADRQLQVDILKLLRQSIYWQRSSGRDHVIPMHHPNAFRFLREEVNASILIVADFGRYSKVMSNLRKDVVAPYMHVMESFLGDDVPDPYNSRTTLL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_020654`
TK1151 ID	TkA05G285290
OH-1004 ID	LXL04_020654
Relationship / confidence	Sequence Supported Annotation Or Model Conflict / Review
Protein identity (%)	98.500
Protein coverage (%)	TK1151 100.000 / OH-1004 27.917 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_020654

Location Chr04:101927913-101935150 (-)

Description Similar to ARAD1: Probable arabinosyltransferase ARAD1

Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g35100`	Probable arabinosyl transferase responsible for the polymerization of arabinose into the arabinan of arabinogalactan.	ARABINAN DEFICIENT 1 is a putative arabinosyltransferase involved in biosynthesis of pectic arabinan in Arabidopsis.2006 · DOI: 10.1104/pp.105.072744 Cell wall pectic arabinans influence the mechanical properties of Arabidopsis thaliana inflorescence stems and their response to mechanical stress.2013 · DOI: 10.1093/pcp/pct074
`At5g44930`	Probable arabinosyl transferase responsible for the polymerization of arabinose into the arabinan of arabinogalactan.	Cell wall pectic arabinans influence the mechanical properties of Arabidopsis thaliana inflorescence stems and their response to mechanical stress.2013 · DOI: 10.1093/pcp/pct074
`At3g07620`	May be involved in cell wall biosynthesis.	No verified direct reference in this release
`At3g42180`	May be involved in cell wall biosynthesis.	No verified direct reference in this release
`At5g61840`	Involved in the synthesis of the hemicellulose glucuronoxylan, a major component of secondary cell walls.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_020654 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0009101 glycoprotein biosynthetic process Biological Process

GO:0009832 plant-type cell wall biogenesis Biological Process

GO:0009834 plant-type secondary cell wall biogenesis Biological Process

GO:0010417 glucuronoxylan biosynthetic process Biological Process

GO:0035884 arabinan biosynthetic process Biological Process

GO:0042546 cell wall biogenesis Biological Process

GO:0045489 pectin biosynthetic process Biological Process

GO:0045492 xylan biosynthetic process Biological Process

GO:0071555 cell wall organization Biological Process

GO:0000138 Golgi trans cisterna Cellular Component

GO:0000139 Golgi membrane Cellular Component

GO:0005576 extracellular region Cellular Component

KEGG gene cross-reference

ath:AT2G35100

ath:AT3G42180

ath:AT5G44930

ath:AT5G61840

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Golgi apparatus0.820

Rank 1 · LXL04_020654 · OH-1004

Endoplasmic reticulum0.093

Rank 2 · LXL04_020654 · OH-1004

Cytoplasm0.052

Rank 3 · LXL04_020654 · OH-1004

Cell membrane0.050

Rank 4 · LXL04_020654 · OH-1004

Extracellular0.041

Rank 5 · LXL04_020654 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF03016.21Exostosin_GT4758-369 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_020654	`PF03016.21`	Exostosin_GT47	58	369	4.6e-70	237.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q6DBG8`	Arabidopsis thaliana	Probable arabinosyltransferase ARAD1	41.689%	Swiss-Prot	moderate database homology
`Q9FLA5`	Arabidopsis thaliana	Probable arabinosyltransferase ARAD2	35.402%	Swiss-Prot	moderate database homology
`Q9SSE8`	Arabidopsis thaliana	Probable glycosyltransferase At3g07620	31.488%	Swiss-Prot	moderate database homology
`Q3EAR7`	Arabidopsis thaliana	Probable glycosyltransferase At3g42180	31.126%	Swiss-Prot	moderate database homology
`Q940Q8`	Arabidopsis thaliana	Probable beta-1,4-xylosyltransferase IRX10L	26.823%	Swiss-Prot	weak database homology

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