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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA05G107280
Reference: TK1151 Chr: Chr05 Coordinates: 28751080-28752183 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1056 bp · TkA05G107280|TK1151|cDNA

ATGGATGGTGTTTATCCAGAACAAGAACACAGTAAGTTTCTGTACCTTGCAAGCAAGAAATCCTTCCGGGACCTCGACATCCCACCTCGCAAGCTTCTCAGTCGCCGACTTCAACAACAAAATGACTCCCCTAGGGTCCTCCCAGAAGAAACACTGCTACAGAAATTCCTCCCTTACAATTCCGGTCACGACAATGACTCCGATCCCTACGCTTCCGACGAATTTCGGATGTACGAGTTCAAGATTCGGAAGTGTACTCG...

CDS

Download CDS FASTA

1056 bp · TkA05G107280|TK1151|CDS

ATGGATGGTGTTTATCCAGAACAAGAACACAGTAAGTTTCTGTACCTTGCAAGCAAGAAATCCTTCCGGGACCTCGACATCCCACCTCGCAAGCTTCTCAGTCGCCGACTTCAACAACAAAATGACTCCCCTAGGGTCCTCCCAGAAGAAACACTGCTACAGAAATTCCTCCCTTACAATTCCGGTCACGACAATGACTCCGATCCCTACGCTTCCGACGAATTTCGGATGTACGAGTTCAAGATTCGGAAGTGTACTCG...

Protein

Download Protein FASTA

351 aa · TkA05G107280|TK1151|PROTEIN

MDGVYPEQEHSKFLYLASKKSFRDLDIPPRKLLSRRLQQQNDSPRVLPEETLLQKFLPYNSGHDNDSDPYASDEFRMYEFKIRKCTRSRSHDWTDCPFAHPGEKARRRCPRRYNYSGNVCADFRRGSCSRGDACEFAHGVFECWLHPFRYRTEACKDGKNCQRKICFFAHTPKQLRSMPVESVISPGKHLNSGHCSSCRCHPGIHHANSPTSILDIDKLSPPTSPPFSTAPTGSGFSPVSRFSDRLALGNFDSSYRDSMN...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA05G107280
TK1151 IDTkA05G107280
OH-1004 IDLXL04_019936
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)95.400
Protein coverage (%)TK1151 93.732 / OH-1004 95.041
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA05G107280
LocationChr05:28751080-28752183 (+)
DescriptionSimilar to TZF4: Zinc finger CCCH domain-containing protein 2
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g03790 Probable transcription repressor that functions as a negative regulator of phytochrome-mediated promotion of seed germination. No verified direct reference in this release
At5g44260 Zinc finger CCCH domain-containing protein 61. No verified direct reference in this release
At2g25900 Zinc finger CCCH domain-containing protein 23. No verified direct reference in this release
At2g19810 Zinc finger CCCH domain-containing protein 20. No verified direct reference in this release

Rice

Reference gene IDPossible functionPapers / DOI
Os01g0192000 Involved in leaf senescence delay. No verified direct reference in this release
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_019936 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006351 DNA-templated transcription Biological Process
GO:0006355 regulation of DNA-templated transcription Biological Process
GO:0006979 response to oxidative stress Biological Process
GO:0010187 negative regulation of seed germination Biological Process
GO:0050832 defense response to fungus Biological Process
GO:0051607 defense response to virus Biological Process
GO:0000932 P-body Cellular Component
GO:0005634 nucleus Cellular Component
GO:0005737 cytoplasm Cellular Component
GO:0005886 plasma membrane Cellular Component
GO:0010494 cytoplasmic stress granule Cellular Component
GO:0003677 DNA binding Molecular Function
KEGG gene cross-reference
ath:AT1G03790
ath:AT2G19810
ath:AT4G29190
ath:AT5G44260
dosa:Os05g0195200
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.560
Rank 1 · TkA05G107280 · TK1151
Nucleus0.399
Rank 2 · TkA05G107280 · TK1151
Mitochondrion0.075
Rank 3 · TkA05G107280 · TK1151
Cell membrane0.053
Rank 4 · TkA05G107280 · TK1151
Golgi apparatus0.033
Rank 5 · TkA05G107280 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF25512zf-CCCH_AtC3H2374-107 aa
PF22628zf-CCCH_1084-103 aa
PF00642zf-CCCH95-101 aa
PF18345zf_CCCH_495-100 aa
PF21803Nab2-zf495-101 aa
PF14608zf-CCCH_295-101 aa
PF25427zf-CCCH_UNK95-104 aa
PF18044zf-CCCH_496-101 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA05G107280PF25512zf-CCCH_AtC3H23741071.5e-2073.4
TkA05G107280PF22628zf-CCCH_10841037.56.9
TkA05G107280PF00642zf-CCCH951016e-0730.0
TkA05G107280PF18345zf_CCCH_4951006.7e-0523.5
TkA05G107280PF21803Nab2-zf4951010.08413.4
TkA05G107280PF14608zf-CCCH_2951010.2312.8
TkA05G107280PF25427zf-CCCH_UNK951044.97.9
TkA05G107280PF18044zf-CCCH_4961010.002818.1
TkA05G107280PF25512zf-CCCH_AtC3H231081131.5e-2073.4
TkA05G107280PF16131Torus1171400.6511.3
TkA05G107280PF00642zf-CCCH1191396e-0730.0
TkA05G107280PF18044zf-CCCH_41191380.002818.1
TkA05G107280PF22628zf-CCCH_101191387.56.9
TkA05G107280PF18345zf_CCCH_41201386.7e-0523.5
TkA05G107280PF14608zf-CCCH_21201390.2312.8
TkA05G107280PF25427zf-CCCH_UNK1241404.97.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9ZWA1Arabidopsis thalianasp|Q9ZWA1|C3H2_ARATH Zinc finger CCCH domain-containing protein 247.200%Swiss-ProtMedium
Q9FKW2Arabidopsis thalianasp|Q9FKW2|C3H61_ARATH Zinc finger CCCH domain-containing protein 6144.200%Swiss-ProtMedium
O82307Arabidopsis thalianasp|O82307|C3H23_ARATH Zinc finger CCCH domain-containing protein 2355.900%Swiss-ProtMedium
O82199Arabidopsis thalianasp|O82199|C3H20_ARATH Zinc finger CCCH domain-containing protein 2062.100%Swiss-ProtLow
Q9FU27Oryza sativa subsp. japonicasp|Q9FU27|C3H2_ORYSJ Zinc finger CCCH domain-containing protein 263.800%Swiss-ProtLow

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