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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA05G012680
Reference: TK1151 Chr: Chr05 Coordinates: 3609619-3610695 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1077 bp · TkA05G012680|TK1151|cDNA

ATGTCTCGCGCTGGGGTCTACCCAGATACATACACGCTGCCCGTTATTCTAACATCCATCTCTCAGAAAAACGACATTTCAATCATCACACAGTTTCACACGGTTGCTAAAAAACACGGGTTAGATACGAATTTGTTTTGCGAGAGTGGGTTCATTAGACTGTACGCCAAAGCGGGTGAATTCAACAACGCACGTAAACTGTTCGACGAAAGTCCTGAGAGAAACCTCGGTTCTTGGAATGCTATTATAGGCGGGTTATC...

CDS

Download CDS FASTA

1077 bp · TkA05G012680|TK1151|CDS

ATGTCTCGCGCTGGGGTCTACCCAGATACATACACGCTGCCCGTTATTCTAACATCCATCTCTCAGAAAAACGACATTTCAATCATCACACAGTTTCACACGGTTGCTAAAAAACACGGGTTAGATACGAATTTGTTTTGCGAGAGTGGGTTCATTAGACTGTACGCCAAAGCGGGTGAATTCAACAACGCACGTAAACTGTTCGACGAAAGTCCTGAGAGAAACCTCGGTTCTTGGAATGCTATTATAGGCGGGTTATC...

Protein

Download Protein FASTA

358 aa · TkA05G012680|TK1151|PROTEIN

MSRAGVYPDTYTLPVILTSISQKNDISIITQFHTVAKKHGLDTNLFCESGFIRLYAKAGEFNNARKLFDESPERNLGSWNAIIGGLSKSGRAREAVNMFLELKRSGLAPDDVTMVSVTSACGSLGDLGLSLQLHKCVLQAKTLEKSDLLMLNSLIDMYGKCGRMDLANIIFSRMKEKNVSSYTSLIVGYATHGPINKALDCFNTMRSEQKTSPNGVTFVGVLTACVHGGFVEKGRDYFKMMKDEYGIEPWLEHYGCMVDL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA05G012680
TK1151 IDTkA05G012680
OH-1004 IDLXL04_019031
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)99.400
Protein coverage (%)TK1151 100.000 / OH-1004 76.660
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA05G012680
LocationChr05:3609619-3610695 (-)
DescriptionSimilar to PCMP-E21: Pentatricopeptide repeat-containing protein At1g77170, mitochondrial
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g77170 Pentatricopeptide repeat-containing protein At1g77170, mitochondrial. No verified direct reference in this release
At1g08070 Involved in multiple sites RNA editing events in chloroplasts. No verified direct reference in this release
At1g59720 Involved in multiple sites RNA editing events in chloroplasts.
Pentatricopeptide repeat proteins with the DYW motif have distinct molecular functions in RNA editing and RNA cleavage in Arabidopsis chloroplasts.2009 · DOI: 10.1105/tpc.108.064667
At2g22410 Pentatricopeptide repeat-containing protein At2g22410, mitochondrial. No verified direct reference in this release
At3g05240 Putative pentatricopeptide repeat-containing protein At3g05240. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_019031 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006397 mRNA processing Biological Process
GO:0009451 RNA modification Biological Process
GO:0016556 mRNA modification Biological Process
GO:0031425 chloroplast RNA processing Biological Process
GO:0005739 mitochondrion Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0003723 RNA binding Molecular Function
GO:0004519 endonuclease activity Molecular Function
GO:0008270 zinc ion binding Molecular Function
KEGG gene cross-reference
ath:AT1G59720
ath:AT1G77170
ath:AT2G02980
ath:AT4G21065
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.711
Rank 1 · TkA05G012680 · TK1151
Plastid0.121
Rank 2 · TkA05G012680 · TK1151
Nucleus0.061
Rank 3 · TkA05G012680 · TK1151
Cytoplasm0.027
Rank 4 · TkA05G012680 · TK1151
Cell membrane0.005
Rank 5 · TkA05G012680 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13041PPR_21-18 aa
PF13812PPR_31-41 aa
PF12854PPR_15-12 aa
PF23276TPR_2416-42 aa
PF17177PPR_long29-116 aa
PF29070MSC6_N49-96 aa
PF14559TPR_1951-75 aa
PF01535PPR52-75 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA05G012680PF13041PPR_21187.7e-32109.9
TkA05G012680PF13812PPR_31411.2e-1042.1
TkA05G012680PF12854PPR_15122.2e-1660.0
TkA05G012680PF23276TPR_2416423.6e-0524.4
TkA05G012680PF17177PPR_long291160.0002821.1
TkA05G012680PF29070MSC6_N49960.01515.1
TkA05G012680PF14559TPR_1951750.003718.3
TkA05G012680PF01535PPR52752.4e-39131.6
TkA05G012680PF13041PPR_252707.7e-32109.9
TkA05G012680PF12854PPR_152702.2e-1660.0
TkA05G012680PF20431E_motif55651.5e-1764.3
TkA05G012680PF22330Rib_mS39_PPR61880.01615.6
TkA05G012680PF13041PPR_2751217.7e-32109.9
TkA05G012680PF12854PPR_175992.2e-1660.0
TkA05G012680PF13812PPR_3751221.2e-1042.1
TkA05G012680PF01535PPR781072.4e-39131.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q3ECB8Arabidopsis thalianasp|Q3ECB8|PP128_ARATH Pentatricopeptide repeat-containing protein At1g77170, mitochondrial62.000%Swiss-ProtHigh
Q9LN01Arabidopsis thalianasp|Q9LN01|PPR21_ARATH Pentatricopeptide repeat-containing protein At1g08070, chloroplastic39.800%Swiss-ProtMedium
Q0WQW5Arabidopsis thalianasp|Q0WQW5|PPR85_ARATH Pentatricopeptide repeat-containing protein At1g59720, chloroplastic/mitochondrial41.100%Swiss-ProtMedium
Q9SJZ3Arabidopsis thalianasp|Q9SJZ3|PP169_ARATH Pentatricopeptide repeat-containing protein At2g22410, mitochondrial33.900%Swiss-ProtMedium
Q9MA95Arabidopsis thalianasp|Q9MA95|PP214_ARATH Putative pentatricopeptide repeat-containing protein At3g0524039.100%Swiss-ProtMedium

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