Gene Card
Gene overview
cDNA / CDS / Protein Sequences
1407 bp · TkA04G127400|TK1151|cDNA
TCGAATTTGACCGTCATACCACCGCCATCGGCCTCGAACAGCCAATGGAGCCGCCGGAGCAACAACGCCATCACCACCACTCAAATGTCTGGTTCATCAAGCCCTTATCCCTACAATCAGACTTCCTCTCCGATTGTCTACTCTCTCTCATATCCCCTTTTAGCTCTCTCTTCTCCTTCGCCTCCGCCATCAACCGTGTCGACTCCACCAAAGAACCCATCAACTCCGCCGCCCCACCCACGGCGGTTCAAGCAAGTACC...
1200 bp · TkA04G127400|TK1151|CDS
ATGGAGCCGCCGGAGCAACAACGCCATCACCACCACTCAAATGTCTGGTTCATCAAGCCCTTATCCCTACAATCAGACTTCCTCTCCGATTGTCTACTCTCTCTCATATCCCCTTTTAGCTCTCTCTTCTCCTTCGCCTCCGCCATCAACCGTGTCGACTCCACCAAAGAACCCATCAACTCCGCCGCCCCACCCACGGCGGTTCAAGCAAGTACCATCCTTTTAAGGAAAGCATTATTGGGTTTTCTGGGCGCTGCTTA...
Protein
Download Protein FASTA399 aa · TkA04G127400|TK1151|PROTEIN
MEPPEQQRHHHHSNVWFIKPLSLQSDFLSDCLLSLISPFSSLFSFASAINRVDSTKEPINSAAPPTAVQASTILLRKALLGFLGAAYVCWILTTVMVVSVAVGVALVNIWVEEPVSIKENLYFDYTDVHPYAIVDLGFDAPGKLAKGVPVGHFCDVRLSFVMPESDYNREIGNFQVVAEALSMNGDMIASASRPCMLRFRSRPLQAMETFLMGVPLLLGIRHETQTVNVPLLKYKEHYYPRTRSMRLSLIPRAGTPFLPQ...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | TkA04G127400 |
|---|---|
| TK1151 ID | TkA04G127400 |
| OH-1004 ID | LXL04_035488 |
| Relationship / confidence | Rbh Sequence Supported / Probable |
| Protein identity (%) | 100.000 |
| Protein coverage (%) | TK1151 100.000 / OH-1004 76.291Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | TK1151 / GWHBCHF00000000 |
SNP / Indel variants and carrier samplesCRA009020 · TK1151
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | TkA04G127400 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr04:33103882-33105383 (-) | |||||||||
| Description | Similar to SEI1: Seipin-1 | |||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | |||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | |||||||||
| GO annotations (OH1004 source) | GO:0006629 lipid metabolic process Biological Process GO:0009846 pollen germination Biological Process GO:0010162 seed dormancy process Biological Process GO:0010344 seed oilbody biogenesis Biological Process GO:0016042 lipid catabolic process Biological Process GO:0019915 lipid storage Biological Process GO:0034389 lipid droplet organization Biological Process GO:0048316 seed development Biological Process GO:0050995 negative regulation of lipid catabolic process Biological Process GO:0080155 regulation of double fertilization forming a zygote and endosperm Biological Process GO:0120162 positive regulation of cold-induced thermogenesis Biological Process GO:0140042 lipid droplet formation Biological Process | |||||||||
| KEGG gene cross-reference | ath:AT1G29760 ath:AT2G34380 ath:AT5G16460 bta:513558 hsa:26580 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF00487FA_desaturase9-110 aaPF06775Seipin94-295 aaPF00487FA_desaturase268-315 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| TkA04G127400 | PF00487 | FA_desaturase | 9 | 110 | 0.014 | 15.9 |
| TkA04G127400 | PF06775 | Seipin | 94 | 295 | 5e-50 | 170.9 |
| TkA04G127400 | PF00487 | FA_desaturase | 268 | 315 | 0.014 | 15.9 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.