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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA02G379080
Reference: TK1151 Chr: Chr02 Coordinates: 96355389-96357200 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1812 bp · TkA02G379080|TK1151|cDNA

ATGCATATTTCTTTCAGAAGATTCAGTTCCATTCCAACTCCACAACCAGATACGATACTTATCAGAAAGGTCAAAGATTTGATCTTGCAAGGACTACATGTTGAAGCTCTTCATCTCTACAAAAACCAACTGCATCTCCATGCGAACACTTGTACCTCTATTATTCCTTCGATCATAAAAGCTTGTACGCTCTCTCAAACCCACCATGGCTTCGGTCTTCAGCTTCATTCTCACTCCCTCAAACTGGGGGTTGATTCAGA...

CDS

Download CDS FASTA

1812 bp · TkA02G379080|TK1151|CDS

ATGCATATTTCTTTCAGAAGATTCAGTTCCATTCCAACTCCACAACCAGATACGATACTTATCAGAAAGGTCAAAGATTTGATCTTGCAAGGACTACATGTTGAAGCTCTTCATCTCTACAAAAACCAACTGCATCTCCATGCGAACACTTGTACCTCTATTATTCCTTCGATCATAAAAGCTTGTACGCTCTCTCAAACCCACCATGGCTTCGGTCTTCAGCTTCATTCTCACTCCCTCAAACTGGGGGTTGATTCAGA...

Protein

Download Protein FASTA

603 aa · TkA02G379080|TK1151|PROTEIN

MHISFRRFSSIPTPQPDTILIRKVKDLILQGLHVEALHLYKNQLHLHANTCTSIIPSIIKACTLSQTHHGFGLQLHSHSLKLGVDSESVISNSFISFYAKFHDITSARQVFDKMPHRDCISWNSIINCFAQKGSYLESLEKFKEMYECGYVAKPELIASILSVCVRHGCTKAGKTIHALSIIDNRFEKSVFLSTALVDLYCRSGDSIMASHVFDSMDYKNEVSWTSMIQGYVGINDSNMALNCLQKMQIEGIKPNIVTLI...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA02G379080
TK1151 IDTkA02G379080
OH-1004 IDLXL04_014990
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)99.300
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA02G379080
LocationChr02:96355389-96357200 (-)
DescriptionSimilar to PCMP-E7: Pentatricopeptide repeat-containing protein At4g31070, mitochondrial
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At4g31070 Pentatricopeptide repeat-containing protein At4g31070, mitochondrial. No verified direct reference in this release
At5g27110 Pentatricopeptide repeat-containing protein At5g27110. No verified direct reference in this release
At4g33990 Pentatricopeptide repeat-containing protein At4g33990. No verified direct reference in this release
At5g39350 Pentatricopeptide repeat-containing protein At5g39350. No verified direct reference in this release
At3g57430 Involved in RNA editing events in chloroplasts.
A study of new Arabidopsis chloroplast RNA editing mutants reveals general features of editing factors and their target sites.2009 · DOI: 10.1105/tpc.109.071472

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_014990 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006397 mRNA processing Biological Process
GO:0009451 RNA modification Biological Process
GO:0010087 phloem or xylem histogenesis Biological Process
GO:0010305 leaf vascular tissue pattern formation Biological Process
GO:0010588 cotyledon vascular tissue pattern formation Biological Process
GO:0048366 leaf development Biological Process
GO:0099402 plant organ development Biological Process
GO:1900865 chloroplast RNA modification Biological Process
GO:0005739 mitochondrion Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0003723 RNA binding Molecular Function
GO:0008270 zinc ion binding Molecular Function
KEGG gene cross-reference
ath:AT4G18750
ath:AT4G31070
ath:AT5G27110
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.659
Rank 1 · TkA02G379080 · TK1151
Plastid0.155
Rank 2 · TkA02G379080 · TK1151
Nucleus0.045
Rank 3 · TkA02G379080 · TK1151
Cytoplasm0.032
Rank 4 · TkA02G379080 · TK1151
Cell membrane0.005
Rank 5 · TkA02G379080 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF17177PPR_long35-168 aa
PF02847MA345-105 aa
PF13041PPR_289-119 aa
PF29070MSC6_N89-144 aa
PF01535PPR91-119 aa
PF13812PPR_392-129 aa
PF12854PPR_192-114 aa
PF05871ESCRT-II113-131 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA02G379080PF17177PPR_long351681.3e-0938.5
TkA02G379080PF02847MA3451050.003717.9
TkA02G379080PF13041PPR_2891194.5e-46155.4
TkA02G379080PF29070MSC6_N891447.2e-1039.2
TkA02G379080PF01535PPR911192.5e-44147.2
TkA02G379080PF13812PPR_3921291.3e-2280.4
TkA02G379080PF12854PPR_1921142e-2072.9
TkA02G379080PF05871ESCRT-II1131311.110.2
TkA02G379080PF12854PPR_11171452e-2072.9
TkA02G379080PF18768RNPP_C1171450.04913.8
TkA02G379080PF13041PPR_21181494.5e-46155.4
TkA02G379080PF13812PPR_31181491.3e-2280.4
TkA02G379080PF01535PPR1201492.5e-44147.2
TkA02G379080PF23276TPR_241211673.8e-1969.6
TkA02G379080PF02847MA31241710.003717.9
TkA02G379080PF23276TPR_241572193.8e-1969.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
O65543Arabidopsis thalianasp|O65543|PP343_ARATH Pentatricopeptide repeat-containing protein At4g31070, mitochondrial45.700%Swiss-ProtMedium
O04659Arabidopsis thalianasp|O04659|PP398_ARATH Pentatricopeptide repeat-containing protein At5g2711035.800%Swiss-ProtMedium
O81767Arabidopsis thalianasp|O81767|PP348_ARATH Pentatricopeptide repeat-containing protein At4g3399033.100%Swiss-ProtMedium
Q9FLZ9Arabidopsis thalianasp|Q9FLZ9|PP405_ARATH Pentatricopeptide repeat-containing protein At5g3935033.000%Swiss-ProtMedium
Q7Y211Arabidopsis thalianasp|Q7Y211|PP285_ARATH Pentatricopeptide repeat-containing protein At3g57430, chloroplastic30.100%Swiss-ProtMedium

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