RubberDandelionOmics Rubber Dandelion Multi-omics Website
More
Transcriptome Expression Annotation Rubber Pathway TF Prediction Targets Protein Network Resequencing Tools Downloads
ZH EN

How to use this page

Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA01G597310
Reference: TK1151 Chr: Chr01 Coordinates: 150371367-150373755 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2313 bp · TkA01G597310|TK1151|cDNA

GTTGTTGTTCACGTGTACGGAAATTCATTAACCTTAAATAATTGTTGGAATTATGGAGGTAGGTAGATTGGTATTTCGATATCTCATGTGTTTGCTACAAAAATGTCCAAATATGCGGGGTGTCGTCATTTTCGAAAATTGCAATCTTTTACCACCTTCAAATACAAGTTTTTCATATCTTCCATGGAATTTACCCGAACTAAACCGCAAACCCACCATGCCTTTTCGGTGCCTTGGAACTCCATTTTTCATCCTACAAC...

CDS

Download CDS FASTA

1491 bp · TkA01G597310|TK1151|CDS

ATGGCTTCTATTTACGGACTTGCGTCTTTCATGAATTGTATTTCTGTTAATAGAAACCCTAATCCTTCAATTTCCCAACTCCATGGAAATCTCACTGTTAATCCGTGCAATAGAGTATCAATTACAAACAGAAACCCTATCTTATCCGTTACTAGATTACGCCAATTTAGGTTTTATAAAGCCGTGGAGTTAGACACGTTTGTAACCAGTGACGACGAAGACGAAATGAGCGAAGGTTTCTTCGAGGCAATTGAGGAATT...

Protein

Download Protein FASTA

496 aa · TkA01G597310|TK1151|PROTEIN

MASIYGLASFMNCISVNRNPNPSISQLHGNLTVNPCNRVSITNRNPILSVTRLRQFRFYKAVELDTFVTSDDEDEMSEGFFEAIEELERMTREPSDVLEEMNSKLSARELQLVLVYFSQEGRDSWCALEVFEWLKKENKVDDETMELMVSLMCGWVKKLIEGKHETKDVIDLLVDMECVGLKPNFSMIEKVISLYWDMGEKDKGVLFVKEVLKRGFGYENGDNQGRKGGPTGYLAWKMMEDGNYTDAIKLVIEIKETNLK...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA01G597310
TK1151 IDTkA01G597310
OH-1004 IDLXL04_000647
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)99.600
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA01G597310
LocationChr01:150371367-150373755 (-)
DescriptionSimilar to At2g30100: Pentatricopeptide repeat-containing protein At2g30100, chloroplastic
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At2g30100 Pentatricopeptide repeat-containing protein At2g30100, chloroplastic. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_000647 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006396 RNA processing Biological Process
GO:0006397 mRNA processing Biological Process
GO:0007005 mitochondrion organization Biological Process
GO:0008380 RNA splicing Biological Process
GO:0009658 chloroplast organization Biological Process
GO:0009880 embryonic pattern specification Biological Process
GO:0010019 chloroplast-nucleus signaling pathway Biological Process
GO:0031930 mitochondria-nucleus signaling pathway Biological Process
GO:0048366 leaf development Biological Process
GO:1900865 chloroplast RNA modification Biological Process
GO:0005737 cytoplasm Cellular Component
GO:0005739 mitochondrion Cellular Component
KEGG gene cross-reference
ath:AT1G10910
ath:AT2G30100
ath:AT2G31400
ath:AT5G04810
ath:AT5G61990
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.492
Rank 1 · TkA01G597310 · TK1151
Plastid0.370
Rank 2 · TkA01G597310 · TK1151
Nucleus0.065
Rank 3 · TkA01G597310 · TK1151
Cytoplasm0.029
Rank 4 · TkA01G597310 · TK1151
Cell membrane0.011
Rank 5 · TkA01G597310 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01535PPR91-103 aa
PF13812PPR_3122-137 aa
PF17177PPR_long122-211 aa
PF13041PPR_2127-153 aa
PF13041PPR_2165-184 aa
PF13812PPR_3172-202 aa
PF13041PPR_2188-201 aa
PF01535PPR191-213 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA01G597310PF01535PPR911030.04714.7
TkA01G597310PF13812PPR_31221374.7e-0627.3
TkA01G597310PF17177PPR_long1222116.5e-0626.4
TkA01G597310PF13041PPR_21271533.3e-0834.2
TkA01G597310PF13041PPR_21651843.3e-0834.2
TkA01G597310PF13812PPR_31722024.7e-0627.3
TkA01G597310PF13041PPR_21882013.3e-0834.2
TkA01G597310PF01535PPR1912130.04714.7
TkA01G597310PF10475Vps54_N2372600.03514.1
TkA01G597310PF13041PPR_22382733.3e-0834.2
TkA01G597310PF13812PPR_32392734.7e-0627.3
TkA01G597310PF17177PPR_long2412836.5e-0626.4
TkA01G597310PF01535PPR2412560.04714.7
TkA01G597310PF13041PPR_23363773.3e-0834.2
TkA01G597310PF01535PPR3373620.04714.7
TkA01G597310PF13812PPR_33603974.7e-0627.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q0WNN7Arabidopsis thalianasp|Q0WNN7|PP176_ARATH Pentatricopeptide repeat-containing protein At2g30100, chloroplastic60.100%Swiss-ProtHigh

JBrowse

View in Genome Browser