TkA01G593260 | RubberDandelionOmics

Gene overview

TkA01G593260

Reference: TK1151 Chr: Chr01 Coordinates: 149357578-149359374 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1030 bp · TkA01G593260|TK1151|cDNA

AAGAAATTCATCACTTTCCTTGCCTTTAAAGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCAGGTTTCTTGAATGTCCAGAGAAAGGGACTTCTATGACGATGCAGGCAAAAGGATAAAAAGAGAGATCGATGCGTATATAAACACCACTACGATGGGGCATATGGCGAGGAGACAGATATTGATTCCGGCACCTGGGACTTTGAACACGATCACACCATGCGCTGCGTGTAAGCTTCTCCGGAG...

CDS

Download CDS FASTA

732 bp · TkA01G593260|TK1151|CDS

ATGTCCAGAGAAAGGGACTTCTATGACGATGCAGGCAAAAGGATAAAAAGAGAGATCGATGCGTATATAAACACCACTACGATGGGGCATATGGCGAGGAGACAGATATTGATTCCGGCACCTGGGACTTTGAACACGATCACACCATGCGCTGCGTGTAAGCTTCTCCGGAGAAGATGCGCAGAAGAGTGTCCATTTTCGCCTTATTTCTCGCCACATGAACCCCATAAGTTTGCCGCCGTTCATAAAATCTTTGGTGC...

Protein

Download Protein FASTA

243 aa · TkA01G593260|TK1151|PROTEIN

MSRERDFYDDAGKRIKREIDAYINTTTMGHMARRQILIPAPGTLNTITPCAACKLLRRRCAEECPFSPYFSPHEPHKFAAVHKIFGASNVSKLLLEVPESQRADAANSLVYEANVRLRDPIYGCMGAISALQQQIQSLQSDLNAVRAEILRYKYREAAANTHDINIIASTLVSSGPITAAQLSTIQAPPTPPPPQPSIVISSSSSSSSSSSSSSSVHLYGIPSSTSGYSTSTIPNNNVSSYFA

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA01G593260`
TK1151 ID	TkA01G593260
OH-1004 ID	LXL04_000694
Relationship / confidence	Sequence Supported Annotation Or Model Conflict / Review
Protein identity (%)	99.600
Protein coverage (%)	TK1151 96.296 / OH-1004 11.812 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA01G593260

Location Chr01:149357578-149359374 (+)

Description Similar to LBD13: LOB domain-containing protein 13

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g40470`	LOB domain-containing protein 15.	No verified direct reference in this release
`At2g30340`	LOB domain-containing protein 13.	No verified direct reference in this release
`At2g30130`	LOB domain-containing protein 12.	No verified direct reference in this release
`At1g31320`	LOB domain-containing protein 4.	No verified direct reference in this release
`At1g65620`	Negative regulator of cell proliferation in the adaxial side of leaves.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_000694 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006355 regulation of DNA-templated transcription Biological Process

GO:0009965 leaf morphogenesis Biological Process

GO:0010016 shoot system morphogenesis Biological Process

GO:0010311 lateral root formation Biological Process

GO:0010628 positive regulation of gene expression Biological Process

GO:0045893 positive regulation of DNA-templated transcription Biological Process

GO:1905177 tracheary element differentiation Biological Process

GO:0005634 nucleus Cellular Component

GO:0000976 transcription cis-regulatory region binding Molecular Function

GO:0001216 DNA-binding transcription activator activity Molecular Function

GO:0003677 DNA binding Molecular Function

GO:0003824 catalytic activity Molecular Function

KEGG gene cross-reference

ath:AT2G30130

ath:AT2G30340

ath:AT2G40470

ath:AT3G27650

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.969

Rank 1 · TkA01G593260 · TK1151

Cytoplasm0.089

Rank 2 · TkA01G593260 · TK1151

Cell membrane0.025

Rank 3 · TkA01G593260 · TK1151

Endoplasmic reticulum0.017

Rank 4 · TkA01G593260 · TK1151

Plastid0.013

Rank 5 · TkA01G593260 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF16331TolA_bind_tri2-16 aa

PF03195LOB49-146 aa

PF16331TolA_bind_tri128-149 aa

PF05308Mito_fiss_reg133-211 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA01G593260	`PF16331`	TolA_bind_tri	2	16	0.029	15.2
TkA01G593260	`PF03195`	LOB	49	146	1.1e-39	135.7
TkA01G593260	`PF16331`	TolA_bind_tri	128	149	0.029	15.2
TkA01G593260	`PF05308`	Mito_fiss_reg	133	211	0.0038	18.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q8L5T5`	Arabidopsis thaliana	sp\|Q8L5T5\|LBD15_ARATH LOB domain-containing protein 15	66.100%	Swiss-Prot	High
`Q9AT61`	Arabidopsis thaliana	sp\|Q9AT61\|LBD13_ARATH LOB domain-containing protein 13	69.500%	Swiss-Prot	Medium
`Q8LBW3`	Arabidopsis thaliana	sp\|Q8LBW3\|LBD12_ARATH LOB domain-containing protein 12	68.000%	Swiss-Prot	Low
`Q9SHE9`	Arabidopsis thaliana	sp\|Q9SHE9\|LBD4_ARATH LOB domain-containing protein 4	61.800%	Swiss-Prot	Low
`O04479`	Arabidopsis thaliana	sp\|O04479\|AS2_ARATH Protein ASYMMETRIC LEAVES 2	56.700%	Swiss-Prot	Medium

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