TkA01G592940 | RubberDandelionOmics

Gene overview

TkA01G592940

Reference: TK1151 Chr: Chr01 Coordinates: 149246638-149251781 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2598 bp · TkA01G592940|TK1151|cDNA

CGTGGCTCCAACTATCCATAGCCACAGATCCTAAAGCTCAAAGATCCTTCTCGATGTCACCTTCTCTCTCACCTTCATCTCCATTCTCGCAACTTTTGACTCTCACAAGAGTCCAATTCCCCTGGATTACCCACCAAACATTTTTCATAATATTCCCCTGTCAATTCAAACCTAGACCCACTTCAAATTCCTCTCAACCTTCGTAATTTTTACTTCACCCAAAATCAGCATGATTTCTCGATTTAAGACGTTAATAAACT...

CDS

Download CDS FASTA

1797 bp · TkA01G592940|TK1151|CDS

ATGCTTAACCCCAATTCACGATCTCCTTCAGGTGATGTTGATGATGTTCATCATCGCTATGTTGAAACCGACCCGACTGGTCGATATGGGCGGTTTAAGGAAGTTCTTGGAAAAGGAGCAATGAAAACGGTATACAAAGCCATTGATGAAGTTCTTGGAATGGAAGTGGCGTGGGGTCAAGTGAAGCTCAACAACTTACTCCGATCTCCCGAAGACTTACAACGTCTCTATTCAGAGGTTCACATTCTTGGAACCCTAAA...

Protein

Download Protein FASTA

598 aa · TkA01G592940|TK1151|PROTEIN

MLNPNSRSPSGDVDDVHHRYVETDPTGRYGRFKEVLGKGAMKTVYKAIDEVLGMEVAWGQVKLNNLLRSPEDLQRLYSEVHILGTLNHDSIIKFYTSWIDVDRRTFNFITEMFTSGTLKEYRKKYNKVDIRAIKIWARQILSGLIYLHGHDPPVIHRDLKCDNIFVNGHLGQVKIGDLGLAAILRGSCRAHTIIGTPEFMAPELYDENYNELVDVYSFGMCVLEMLTHEYPYSECTNPAQIYKKVTSGKLPRAFYKVKNM...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA01G592940`
TK1151 ID	TkA01G592940
OH-1004 ID	LXL04_000704
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	99.700
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA01G592940

Location Chr01:149246638-149251781 (+)

Description Similar to WNK4: Probable serine/threonine-protein kinase WNK4

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g58350`	May regulate flowering time by modulating the photoperiod pathway.	No verified direct reference in this release
`At3g51630`	Regulates flowering time by modulating the photoperiod pathway.	The plant WNK gene family and regulation of flowering time in Arabidopsis.2008 · DOI: 10.1111/j.1438-8677.2008.00072.x

Rice

Reference gene ID	Possible function	Papers / DOI
`UniProt: A2YMV6`	Probable serine/threonine-protein kinase WNK1.	No verified direct reference in this release
`Os07g0572800`	Probable serine/threonine-protein kinase WNK1.	No verified direct reference in this release
`Os11g0114600`	Probable serine/threonine-protein kinase WNK7.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_000704 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006468 protein phosphorylation Biological Process

GO:0035556 intracellular signal transduction Biological Process

GO:0046777 protein autophosphorylation Biological Process

GO:0048573 photoperiodism, flowering Biological Process

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0004672 protein kinase activity Molecular Function

GO:0004674 protein serine/threonine kinase activity Molecular Function

GO:0005524 ATP binding Molecular Function

GO:0043424 protein histidine kinase binding Molecular Function

GO:0106310 protein serine kinase activity Molecular Function

KEGG gene cross-reference

ath:AT3G51630

ath:AT5G58350

dosa:Os07g0572800

dosa:Os11g0114600

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.391

Rank 1 · TkA01G592940 · TK1151

Cell membrane0.337

Rank 2 · TkA01G592940 · TK1151

Nucleus0.315

Rank 3 · TkA01G592940 · TK1151

Lysosome / Vacuole0.069

Rank 4 · TkA01G592940 · TK1151

Golgi apparatus0.064

Rank 5 · TkA01G592940 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF07714PK_Tyr_Ser-Thr32-253 aa

PF00069Pkinase33-288 aa

PF24889CCTL2_WNK356-394 aa

PF12202OSR1_C357-378 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA01G592940	`PF07714`	PK_Tyr_Ser-Thr	32	253	4.4e-29	102.3
TkA01G592940	`PF00069`	Pkinase	33	288	1.5e-45	156.4
TkA01G592940	`PF24889`	CCTL2_WNK	356	394	0.013	16.1
TkA01G592940	`PF12202`	OSR1_C	357	378	0.0033	18.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9LVL5`	Arabidopsis thaliana	sp\|Q9LVL5\|WNK4_ARATH Probable serine/threonine-protein kinase WNK4	58.300%	Swiss-Prot	High
`Q9SCU5`	Arabidopsis thaliana	sp\|Q9SCU5\|WNK5_ARATH Probable serine/threonine-protein kinase WNK5	70.700%	Swiss-Prot	Medium
`A2YMV6`	Oryza sativa subsp. indica	sp\|A2YMV6\|WNK1_ORYSI Probable serine/threonine-protein kinase WNK1	57.000%	Swiss-Prot	Medium
`Q0D598`	Oryza sativa subsp. japonica	sp\|Q0D598\|WNK1_ORYSJ Probable serine/threonine-protein kinase WNK1	57.000%	Swiss-Prot	Medium
`Q2RBE3`	Oryza sativa subsp. japonica	sp\|Q2RBE3\|WNK7_ORYSJ Probable serine/threonine-protein kinase WNK7	47.500%	Swiss-Prot	Medium

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