LXL04_000704 | RubberDandelionOmics

Gene overview

LXL04_000704

Reference: OH-1004 Chr: Chr01 Coordinates: 12955572-12959799 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1797 bp · LXL04_000704|LXL04_000704|OH1004|cDNA

ATGCTTAACCCCAATTCACGATCTCCTTCAGGTGATGTTGATGATGTTCATCATCGCTATGTTGAAACCGACCCGACTGGTCGATATGGGCGGTTTAAGGAAGTTCTTGGAAAAGGAGCAATGAAAACGGTATACAAAGCCATTGATGAAGTTCTTGGAATGGAAGTGGCGTGGGGTCAAGTGAAGCTCAACAACTTACTCCGATCTCCCGAAGACTTACAACGTCTCTATTCAGAGGTTCACATTCTTGGAACCCTAAA...

CDS

Download CDS FASTA

1797 bp · LXL04_000704|LXL04_000704|OH1004|CDS

ATGCTTAACCCCAATTCACGATCTCCTTCAGGTGATGTTGATGATGTTCATCATCGCTATGTTGAAACCGACCCGACTGGTCGATATGGGCGGTTTAAGGAAGTTCTTGGAAAAGGAGCAATGAAAACGGTATACAAAGCCATTGATGAAGTTCTTGGAATGGAAGTGGCGTGGGGTCAAGTGAAGCTCAACAACTTACTCCGATCTCCCGAAGACTTACAACGTCTCTATTCAGAGGTTCACATTCTTGGAACCCTAAA...

Protein

Download Protein FASTA

598 aa · LXL04_000704|LXL04_000704|OH1004|PROTEIN

MLNPNSRSPSGDVDDVHHRYVETDPTGRYGRFKEVLGKGAMKTVYKAIDEVLGMEVAWGQVKLNNLLRSPEDLQRLYSEVHILGTLNHDSIIKFYTSWIDVDRRTFNFITEMFTSGTLKEYRKKYNKVDIRAIKIWARQILSGLIYLHGHDPPVIHRDLKCDNIFVNGHLGQVKIGDLGLAAILRGSCRAHTIIGTPEFMAPELYDENYNELVDVYSFGMCVLEMLTHEYPYSECTNPAQIYKKVTSGKLPRAFYKVKNM...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_000704`
TK1151 ID	TkA01G592940
OH-1004 ID	LXL04_000704
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	99.700
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_000704

Location Chr01:12955572-12959799 (-)

Description Similar to WNK4: Probable serine/threonine-protein kinase WNK4

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g58350`	May regulate flowering time by modulating the photoperiod pathway.	No verified direct reference in this release
`At3g51630`	Regulates flowering time by modulating the photoperiod pathway.	The plant WNK gene family and regulation of flowering time in Arabidopsis.2008 · DOI: 10.1111/j.1438-8677.2008.00072.x

Rice

Reference gene ID	Possible function	Papers / DOI
`Os11g0114600`	Probable serine/threonine-protein kinase WNK7.	No verified direct reference in this release
`Os07g0572800`	Probable serine/threonine-protein kinase WNK1.	No verified direct reference in this release
`UniProt: A2YMV6`	Probable serine/threonine-protein kinase WNK1.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_000704 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006468 protein phosphorylation Biological Process

GO:0035556 intracellular signal transduction Biological Process

GO:0046777 protein autophosphorylation Biological Process

GO:0048573 photoperiodism, flowering Biological Process

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0004672 protein kinase activity Molecular Function

GO:0004674 protein serine/threonine kinase activity Molecular Function

GO:0005524 ATP binding Molecular Function

GO:0043424 protein histidine kinase binding Molecular Function

GO:0106310 protein serine kinase activity Molecular Function

KEGG gene cross-reference

ath:AT3G51630

ath:AT5G58350

dosa:Os07g0572800

dosa:Os11g0114600

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.391

Rank 1 · LXL04_000704 · OH-1004

Cell membrane0.332

Rank 2 · LXL04_000704 · OH-1004

Nucleus0.314

Rank 3 · LXL04_000704 · OH-1004

Lysosome / Vacuole0.071

Rank 4 · LXL04_000704 · OH-1004

Golgi apparatus0.065

Rank 5 · LXL04_000704 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF07714.24PK_Tyr_Ser-Thr32-253 aa

PF00069.32Pkinase33-288 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_000704	`PF07714.24`	PK_Tyr_Ser-Thr	32	253	4.4e-29	102.3
LXL04_000704	`PF00069.32`	Pkinase	33	288	1.5e-45	156.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9LVL5`	Arabidopsis thaliana	Probable serine/threonine-protein kinase WNK4	60.420%	Swiss-Prot	strong database homology
`Q9SCU5`	Arabidopsis thaliana	Probable serine/threonine-protein kinase WNK5	58.182%	Swiss-Prot	strong database homology
`Q2RBE3`	Oryza sativa subsp. japonica	Probable serine/threonine-protein kinase WNK7	49.829%	Swiss-Prot	moderate database homology
`Q0D598`	Oryza sativa subsp. japonica	Probable serine/threonine-protein kinase WNK1	55.381%	Swiss-Prot	moderate database homology
`A2YMV6`	Oryza sativa subsp. indica	Probable serine/threonine-protein kinase WNK1	55.381%	Swiss-Prot	moderate database homology

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